Variant report

Variant	rs561456276
Chromosome Location	chr9:103236157-103236158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103187999..103190908-chr9:103233595..103236918,6	MCF-7	breast:
2	chr9:103188255..103190992-chr9:103234182..103236159,2	MCF-7	breast:
3	chr9:103113352..103115792-chr9:103234740..103236804,2	K562	blood:
4	chr9:103235574..103237865-chr9:103240379..103242748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction
ENSG00000136891	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3348068	chr9:103234431-103236904	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3376333	chr9:103234756-103237304	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103234600-103236600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:103234600-103237400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr9:103234600-103237400	Active TSS	Fetal Kidney	kidney
4	chr9:103234800-103236400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr9:103234800-103236400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:103234800-103236400	Bivalent/Poised TSS	Thymus	Thymus
7	chr9:103234800-103236600	Active TSS	Primary T cells from cord blood	blood
8	chr9:103234800-103236600	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr9:103234800-103236600	Active TSS	NH-A	brain
10	chr9:103234800-103237000	Active TSS	Brain Cingulate Gyrus	brain
11	chr9:103234800-103237400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:103234800-103237400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:103234800-103237400	Active TSS	Brain Germinal Matrix	brain
14	chr9:103235000-103236400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:103235000-103236400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
16	chr9:103235000-103236400	Active TSS	Ovary	ovary
17	chr9:103235000-103236400	Active TSS	Stomach Smooth Muscle	stomach
18	chr9:103235000-103236600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:103235000-103236600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:103235000-103236600	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr9:103235000-103236600	Active TSS	Aorta	Aorta
22	chr9:103235000-103236600	Active TSS	Psoas Muscle	Psoas
23	chr9:103235000-103236600	Active TSS	Rectal Smooth Muscle	rectum
24	chr9:103235000-103236600	Active TSS	HMEC	breast
25	chr9:103235000-103236600	Active TSS	NHEK	skin
26	chr9:103235000-103236800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:103235000-103236800	Active TSS	Fetal Brain Female	brain
28	chr9:103235000-103236800	Active TSS	A549	lung
29	chr9:103235000-103236800	Active TSS	NHLF	lung
30	chr9:103235000-103237000	Active TSS	HSMMtube	muscle
31	chr9:103235000-103237000	Active TSS	Osteobl	bone
32	chr9:103235000-103237200	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr9:103235000-103237200	Active TSS	HSMM	muscle
34	chr9:103235000-103237200	Active TSS	NHDF-Ad	bronchial
35	chr9:103235000-103237400	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr9:103235000-103237600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:103235000-103237600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:103235000-103237600	Active TSS	Brain Angular Gyrus	brain
39	chr9:103235000-103237600	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr9:103235000-103238200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr9:103235200-103236200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
42	chr9:103235200-103236200	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr9:103235200-103236400	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr9:103235200-103236400	Active TSS	Colon Smooth Muscle	Colon
45	chr9:103235200-103236400	Weak transcription	Fetal Brain Male	brain
46	chr9:103235200-103236400	Weak transcription	Fetal Heart	heart
47	chr9:103235200-103236400	Transcr. at gene 5' and 3'	Right Atrium	heart
48	chr9:103235200-103236400	Bivalent/Poised TSS	HepG2	liver
49	chr9:103235200-103236400	Active TSS	K562	blood
50	chr9:103235200-103236600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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