Variant report

Variant	rs561456378
Chromosome Location	chr1:10835800-10835801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10835278..10836793-chr1:10960559..10962268,2	MCF-7	breast:
2	chr1:10824911..10826974-chr1:10833572..10835965,2	MCF-7	breast:
3	chr1:10831143..10833535-chr1:10835347..10836954,2	K562	blood:
4	chr1:10834395..10836864-chr1:10924588..10926735,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014818	chr1:10675978-10846823	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv464838	chr1:10684098-10842021	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv545400	chr1:10684098-10842021	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv525693	chr1:10694125-10840905	Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
8	nsv1014705	chr1:10703941-10840824	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv832314	chr1:10704811-10859919	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv871772	chr1:10832322-10894724	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3435817	chr1:10835465-10839763	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10830600-10837400	Enhancers	Left Ventricle	heart
2	chr1:10831800-10837600	Enhancers	Fetal Heart	heart
3	chr1:10832000-10837000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:10832000-10838000	Enhancers	Stomach Mucosa	stomach
5	chr1:10832000-10838600	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:10832000-10839000	Enhancers	Esophagus	oesophagus
7	chr1:10832400-10837200	Enhancers	Fetal Muscle Leg	muscle
8	chr1:10832600-10853400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:10832800-10837400	Enhancers	Right Atrium	heart
10	chr1:10833200-10836600	Weak transcription	Colonic Mucosa	Colon
11	chr1:10833400-10837400	Enhancers	Psoas Muscle	Psoas
12	chr1:10833800-10836800	Weak transcription	Lung	lung
13	chr1:10833800-10837800	Enhancers	Colon Smooth Muscle	Colon
14	chr1:10834000-10836600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:10834200-10836400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:10834200-10837200	Enhancers	Fetal Muscle Trunk	muscle
17	chr1:10834200-10839400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:10834400-10836400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:10834400-10839400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:10834600-10835800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:10834600-10837200	Enhancers	Pancreas	Pancrea
22	chr1:10834800-10836000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:10834800-10836000	Flanking Active TSS	NHEK	skin
24	chr1:10835000-10835800	Enhancers	Brain Angular Gyrus	brain
25	chr1:10835000-10835800	Weak transcription	Right Ventricle	heart
26	chr1:10835000-10835800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr1:10835000-10835800	Enhancers	HMEC	breast
28	chr1:10835000-10837200	Enhancers	Stomach Smooth Muscle	stomach
29	chr1:10835000-10837600	Strong transcription	Fetal Intestine Small	intestine
30	chr1:10835200-10836800	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr1:10835200-10837600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr1:10835600-10835800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr1:10835600-10836200	Enhancers	Fetal Kidney	kidney
34	chr1:10835600-10837000	Enhancers	Rectal Smooth Muscle	rectum
35	chr1:10835600-10837800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:10835600-10838000	Enhancers	Gastric	stomach
37	chr1:10835800-10836200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr1:10835800-10836800	Enhancers	Brain Germinal Matrix	brain
39	chr1:10835800-10837600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:10835800-10838000	Enhancers	Right Ventricle	heart
41	chr1:10835800-10838200	Weak transcription	HMEC	breast
42	chr1:10835800-10839400	Weak transcription	Brain Angular Gyrus	brain
43	chr1:10835800-10840800	Enhancers	Skeletal Muscle Female	skeletal muscle

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