Variant report

Variant	rs561460248
Chromosome Location	chr4:15721984-15721985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15708496..15710656-chr4:15720445..15723792,3	K562	blood:
2	chr4:15681673..15684489-chr4:15721477..15723433,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109743	Chromatin interaction
ENSG00000118564	Chromatin interaction
ENSG00000237765	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv10459	chr4:15721343-15724582	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15697600-15723600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:15705000-15735200	Weak transcription	Lung	lung
3	chr4:15705200-15731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:15705400-15727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:15706000-15727800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
7	chr4:15708800-15739400	Weak transcription	Ovary	ovary
8	chr4:15709400-15731800	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:15710000-15723600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:15716200-15723400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:15716400-15723000	Weak transcription	A549	lung
12	chr4:15716600-15725200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:15716800-15727600	Weak transcription	Brain Anterior Caudate	brain
14	chr4:15718200-15725000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:15718200-15725600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:15718600-15722200	Weak transcription	Placenta	Placenta
17	chr4:15719200-15724800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr4:15719400-15723000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
19	chr4:15719400-15735800	Weak transcription	NHDF-Ad	bronchial
20	chr4:15719600-15723000	Genic enhancers	Primary monocytes fromperipheralblood	blood
21	chr4:15719600-15724200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:15719600-15724600	Weak transcription	Hela-S3	cervix
23	chr4:15719600-15725200	Weak transcription	Left Ventricle	heart
24	chr4:15719800-15723600	Weak transcription	Osteobl	bone
25	chr4:15719800-15725400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:15719800-15726400	Weak transcription	Fetal Lung	lung
27	chr4:15719800-15736600	Weak transcription	Spleen	Spleen
28	chr4:15720000-15725400	Weak transcription	NHLF	lung
29	chr4:15720000-15725600	Weak transcription	NH-A	brain
30	chr4:15720200-15727400	Strong transcription	Fetal Intestine Large	intestine
31	chr4:15720400-15722000	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr4:15720400-15725400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:15720600-15729000	Strong transcription	Duodenum Mucosa	Duodenum
34	chr4:15720800-15724600	Strong transcription	Fetal Intestine Small	intestine
35	chr4:15720800-15727200	Weak transcription	Colonic Mucosa	Colon
36	chr4:15721000-15723600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr4:15721000-15724000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:15721000-15724600	Weak transcription	Adipose Nuclei	Adipose
39	chr4:15721000-15726400	Weak transcription	Fetal Stomach	stomach
40	chr4:15721000-15726400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:15721000-15727000	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr4:15721000-15728800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:15721000-15729600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:15721400-15728800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:15721600-15724600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:15721600-15725400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:15721600-15725600	Weak transcription	HepG2	liver
48	chr4:15721600-15726600	Weak transcription	Colon Smooth Muscle	Colon
49	chr4:15721800-15723000	Genic enhancers	Monocytes-CD14+_RO01746	blood

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