The 2.0 version of rSNPBase

Variant report

Variant rs561462458
Chromosome Location chr13:49578069-49578070
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:49551400-49638800 Weak transcription Pancreas Pancrea
2 chr13:49553600-49596200 Weak transcription Ovary ovary
3 chr13:49555000-49581600 Weak transcription Left Ventricle heart
4 chr13:49557000-49579800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr13:49557000-49626800 Weak transcription Right Ventricle heart
6 chr13:49560000-49587600 Weak transcription Fetal Kidney kidney
7 chr13:49560200-49581000 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr13:49560800-49587200 Weak transcription Small Intestine intestine
9 chr13:49563800-49583400 Weak transcription Fetal Heart heart
10 chr13:49566000-49585400 Weak transcription Fetal Stomach stomach
11 chr13:49567000-49580200 Weak transcription HSMM muscle
12 chr13:49568000-49598200 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr13:49568600-49580400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
14 chr13:49568800-49626800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr13:49568800-49627000 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr13:49569000-49580200 Weak transcription Placenta Placenta
17 chr13:49570400-49584400 Weak transcription Gastric stomach
18 chr13:49571200-49584200 Weak transcription Thymus Thymus
19 chr13:49572000-49604800 Weak transcription Aorta Aorta
20 chr13:49572400-49581400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr13:49573400-49634800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
22 chr13:49573600-49584000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr13:49573600-49595600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr13:49574000-49580200 Weak transcription Hela-S3 cervix
25 chr13:49574200-49585800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr13:49574400-49581400 Weak transcription HMEC breast
27 chr13:49574600-49580400 Weak transcription Muscle Satellite Cultured Cells --
28 chr13:49574600-49580800 Weak transcription NH-A brain
29 chr13:49574800-49580200 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr13:49574800-49580200 Weak transcription Dnd41 blood
31 chr13:49574800-49580400 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr13:49574800-49580800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr13:49574800-49580800 Weak transcription Duodenum Mucosa Duodenum
34 chr13:49574800-49583600 Weak transcription HUVEC blood vessel
35 chr13:49574800-49585800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr13:49575000-49580800 Weak transcription Primary B cells from cord blood blood
37 chr13:49575000-49581400 Weak transcription Primary T cells from cord blood blood
38 chr13:49575000-49587200 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr13:49575200-49580400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr13:49575600-49580800 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr13:49575800-49580200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr13:49576000-49584200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
43 chr13:49576000-49587000 Weak transcription Brain Germinal Matrix brain
44 chr13:49576200-49595400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr13:49576800-49579800 Weak transcription NHDF-Ad bronchial
46 chr13:49576800-49580600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr13:49577000-49578400 Weak transcription ES-I3 Cell Line embryonic stem cell
48 chr13:49577000-49580000 Weak transcription Primary B cells from peripheral blood blood
49 chr13:49577000-49580200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr13:49577200-49586400 Weak transcription Fetal Brain Female brain

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Last update: Aug 31, 2015