Variant report

Variant	rs56147895
Chromosome Location	chr19:42183626-42183627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12327741	1.00[AMR][1000 genomes]
rs28439053	1.00[AMR][1000 genomes]
rs57916682	1.00[AMR][1000 genomes]
rs73931709	1.00[AMR][1000 genomes]
rs73931721	1.00[AMR][1000 genomes]
rs73931726	1.00[AMR][1000 genomes]
rs73931737	1.00[AMR][1000 genomes]
rs73931741	1.00[AMR][1000 genomes]
rs73931745	1.00[AMR][1000 genomes]
rs73931765	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73932004	1.00[AMR][1000 genomes]
rs73932020	1.00[AMR][1000 genomes]
rs73932021	1.00[AMR][1000 genomes]
rs73932023	1.00[AMR][1000 genomes]
rs73932029	1.00[AMR][1000 genomes]
rs73932033	1.00[AMR][1000 genomes]
rs73934070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73934071	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3319146	chr19:42082639-42212929	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3319147	chr19:42082742-42212770	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3422975	chr19:42106166-42212774	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42178600-42185800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr19:42182000-42185800	Weak transcription	Colonic Mucosa	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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