Variant report

Variant	rs561499845
Chromosome Location	chr13:49692627-49692628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49687421..49689642-chr13:49691753..49693412,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1793883	chr13:49543723-49789164	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1035	chr13:49656225-49700371	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv1796840	chr13:49671215-49760666	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1052168	chr13:49691378-49743696	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49685000-49693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:49685600-49692800	Weak transcription	Colonic Mucosa	Colon
3	chr13:49685600-49705400	Weak transcription	K562	blood
4	chr13:49687600-49693000	Weak transcription	Brain Hippocampus Middle	brain
5	chr13:49687600-49705800	Weak transcription	Small Intestine	intestine
6	chr13:49687600-49706200	Weak transcription	Fetal Heart	heart
7	chr13:49687600-49724200	Weak transcription	Esophagus	oesophagus
8	chr13:49687600-49789000	Weak transcription	Stomach Mucosa	stomach
9	chr13:49688000-49705000	Weak transcription	Right Ventricle	heart
10	chr13:49688200-49702200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:49688800-49693000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:49688800-49693600	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr13:49688800-49694000	Strong transcription	Liver	Liver
14	chr13:49688800-49694000	Strong transcription	Placenta	Placenta
15	chr13:49689000-49693000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr13:49689000-49693600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr13:49689000-49693600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:49689000-49694000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:49689000-49711200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr13:49689200-49693000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr13:49689200-49693600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr13:49689200-49693600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr13:49689200-49693600	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr13:49689200-49693600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
25	chr13:49689200-49693600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr13:49689200-49693600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr13:49689200-49693800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr13:49689200-49693800	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr13:49689200-49693800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr13:49689400-49693000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr13:49689400-49693000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr13:49689400-49693000	Strong transcription	Fetal Muscle Leg	muscle
33	chr13:49689400-49693400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr13:49689400-49693600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr13:49689400-49693600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr13:49689400-49693800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr13:49689400-49693800	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:49689400-49693800	Strong transcription	Osteobl	bone
39	chr13:49689400-49694000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr13:49689400-49694000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr13:49689400-49694000	Strong transcription	Primary T cells from cord blood	blood
42	chr13:49689400-49694000	Strong transcription	Adipose Nuclei	Adipose
43	chr13:49689400-49694000	Strong transcription	Fetal Lung	lung
44	chr13:49689400-49694200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr13:49689400-49694200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr13:49689400-49694200	Strong transcription	Fetal Thymus	thymus
47	chr13:49689400-49694200	Strong transcription	Left Ventricle	heart
48	chr13:49689400-49694200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr13:49689400-49694400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr13:49689600-49693400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links