Variant report

Variant	rs56150065
Chromosome Location	chr12:32779938-32779939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1004969	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052113	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052115	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052116	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11052119	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299270	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299609	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299979	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300443	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300666	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12300734	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307670	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307858	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311077	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312688	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312968	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314101	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314420	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314569	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12321158	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12321285	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322190	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920101	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17539491	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17539792	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17539848	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995226	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995227	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133543	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34174320	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575368	1.00[ASN][1000 genomes]
rs4931029	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931030	1.00[ASN][1000 genomes]
rs4931031	1.00[ASN][1000 genomes]
rs4931644	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931645	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931646	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4931647	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55938059	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56110646	1.00[ASN][1000 genomes]
rs56352987	1.00[ASN][1000 genomes]
rs59860008	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66996003	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083459	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083465	0.87[EUR][1000 genomes]
rs73083468	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083477	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083486	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083495	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083501	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085430	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085442	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73087441	1.00[ASN][1000 genomes]
rs73087445	1.00[ASN][1000 genomes]
rs7488806	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
3	chr12:32744200-32797600	Weak transcription	Fetal Heart	heart
4	chr12:32754200-32795200	Weak transcription	Primary B cells from cord blood	blood
5	chr12:32755400-32800600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr12:32756200-32789800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:32757000-32783400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr12:32757400-32799600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:32757600-32798000	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr12:32757800-32797800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:32758400-32799400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:32758600-32780800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr12:32758600-32797800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:32758600-32799600	Strong transcription	Liver	Liver
15	chr12:32758600-32800400	Strong transcription	HSMM	muscle
16	chr12:32758800-32799600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr12:32759800-32795000	Weak transcription	Fetal Kidney	kidney
18	chr12:32760200-32795000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr12:32760600-32793200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr12:32762800-32799600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:32765200-32794000	Weak transcription	NHLF	lung
22	chr12:32765400-32780800	Weak transcription	Pancreas	Pancrea
23	chr12:32765400-32784800	Weak transcription	Colon Smooth Muscle	Colon
24	chr12:32765400-32789000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr12:32765400-32790400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr12:32765600-32780400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr12:32765800-32797000	Strong transcription	Adipose Nuclei	Adipose
28	chr12:32766400-32780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr12:32766600-32783400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:32767400-32790600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr12:32767400-32797000	Weak transcription	Psoas Muscle	Psoas
32	chr12:32768400-32799800	Weak transcription	NHDF-Ad	bronchial
33	chr12:32768600-32783000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr12:32769400-32783200	Strong transcription	HSMMtube	muscle
35	chr12:32769600-32788200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr12:32769800-32782400	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr12:32771400-32780800	Weak transcription	Brain Angular Gyrus	brain
38	chr12:32771400-32780800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr12:32771400-32783000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr12:32771400-32796200	Strong transcription	Fetal Intestine Large	intestine
41	chr12:32771800-32783200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr12:32772000-32782400	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr12:32772400-32784200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr12:32772600-32783800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr12:32772600-32796000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:32772600-32800000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr12:32772800-32783200	Strong transcription	Stomach Smooth Muscle	stomach
48	chr12:32773000-32784800	Strong transcription	Fetal Stomach	stomach
49	chr12:32773000-32787200	Strong transcription	Fetal Intestine Small	intestine
50	chr12:32773400-32780800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links