Variant report

Variant	rs56150508
Chromosome Location	chr5:100192199-100192200
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:100187668..100190190-chr5:100190255..100193150,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17160818	0.92[AFR][1000 genomes]
rs17725086	0.92[AFR][1000 genomes]
rs55667057	0.88[AFR][1000 genomes]
rs59131585	0.88[AFR][1000 genomes]
rs61616749	1.00[AFR][1000 genomes]
rs73775452	0.88[AFR][1000 genomes]
rs73775454	1.00[AFR][1000 genomes]
rs73775645	1.00[AFR][1000 genomes]
rs73775646	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100147600-100218000	Weak transcription	Thymus	Thymus
2	chr5:100177600-100215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:100178200-100218400	Weak transcription	Placenta	Placenta
4	chr5:100187000-100199200	Weak transcription	Lung	lung
5	chr5:100187200-100192800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:100187800-100192400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:100187800-100193000	Enhancers	Primary B cells from peripheral blood	blood
8	chr5:100188200-100192200	Weak transcription	Spleen	Spleen
9	chr5:100188200-100192800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:100188400-100192200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:100188400-100192200	Weak transcription	Brain Germinal Matrix	brain
12	chr5:100188400-100194600	Strong transcription	Dnd41	blood
13	chr5:100189200-100193200	Weak transcription	Fetal Kidney	kidney
14	chr5:100190000-100194200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:100190400-100192200	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:100190400-100192200	Strong transcription	Fetal Thymus	thymus
17	chr5:100190400-100192200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
18	chr5:100190600-100192600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
19	chr5:100190600-100192600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:100190800-100192400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr5:100190800-100192800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr5:100190800-100198400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr5:100191000-100192200	Weak transcription	Adipose Nuclei	Adipose
24	chr5:100191000-100192600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr5:100191000-100194200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr5:100191000-100194200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:100191000-100194600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr5:100191200-100192200	Genic enhancers	Primary B cells from cord blood	blood
29	chr5:100191200-100192400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:100191200-100198200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:100191200-100224400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr5:100191200-100225200	Weak transcription	Fetal Lung	lung
33	chr5:100191400-100208200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr5:100191400-100212200	Weak transcription	HUVEC	blood vessel
35	chr5:100191600-100193800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr5:100192000-100192800	Enhancers	Primary T cells from cord blood	blood
37	chr5:100192000-100194400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr5:100192000-100198400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr5:100192000-100205800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr5:100192000-100208200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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