Variant report

Variant	rs561507892
Chromosome Location	chr5:126093143-126093144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:126093073-126093182	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126076590..126078230-chr5:126093014..126095500,2	K562	blood:
2	chr5:126091168..126095262-chr5:126111673..126114591,6	K562	blood:
3	chr5:126089250..126100296-chr5:126109758..126119075,20	K562	blood:
4	chr5:126079615..126082602-chr5:126091477..126095307,3	K562	blood:
5	chr5:126091797..126096824-chr5:126110600..126114072,4	MCF-7	breast:
6	chr5:126086478..126088034-chr5:126091478..126094042,2	MCF-7	breast:
7	chr5:126092644..126095197-chr5:126095579..126097728,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv823208	chr5:126092945-126094740	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126078600-126094200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:126084800-126094000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:126084800-126094200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:126085200-126093800	Weak transcription	Dnd41	blood
5	chr5:126086600-126094200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:126087000-126097800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:126087400-126094000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:126089400-126094000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:126090000-126093800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr5:126090600-126093600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:126091600-126093200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:126091600-126093400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr5:126091600-126093800	Weak transcription	Primary B cells from cord blood	blood
14	chr5:126091600-126093800	Weak transcription	K562	blood
15	chr5:126091600-126094200	Weak transcription	Fetal Thymus	thymus
16	chr5:126092800-126093800	Enhancers	GM12878-XiMat	blood
17	chr5:126092800-126094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:126093000-126093200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:126093000-126094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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