Variant report

Variant	rs561509711
Chromosome Location	chr6:37451507-37451508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37451407..37454249-chr6:37454793..37456445,3	K562	blood:
2	chr6:37451478..37453334-chr6:37536422..37539056,2	MCF-7	breast:
3	chr6:37348034..37349809-chr6:37450767..37452379,2	K562	blood:
4	chr6:37444354..37450261-chr6:37451286..37455412,6	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv981137	chr6:37450722-37452830	Genic enhancers Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37424600-37451600	Strong transcription	Fetal Thymus	thymus
2	chr6:37435800-37452000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:37436200-37457200	Strong transcription	Primary T cells from cord blood	blood
4	chr6:37436400-37454600	Strong transcription	Thymus	Thymus
5	chr6:37436600-37452000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:37436600-37452000	Strong transcription	Fetal Lung	lung
7	chr6:37436800-37451800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:37436800-37452200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:37437000-37451800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:37437400-37454400	Strong transcription	Dnd41	blood
11	chr6:37437600-37451800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr6:37437600-37452000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:37437800-37451600	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:37438000-37451600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:37438000-37454600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:37438200-37451600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:37438200-37451600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:37438200-37451800	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:37438200-37452000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:37438200-37452000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr6:37438200-37452400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:37438200-37454400	Strong transcription	Placenta	Placenta
23	chr6:37438400-37451600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:37438400-37451800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr6:37438400-37452000	Strong transcription	Aorta	Aorta
26	chr6:37438400-37452000	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr6:37438400-37453400	Strong transcription	Fetal Intestine Large	intestine
28	chr6:37438600-37451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:37438600-37453000	Strong transcription	Lung	lung
30	chr6:37438600-37454600	Strong transcription	Spleen	Spleen
31	chr6:37439000-37452000	Strong transcription	Ovary	ovary
32	chr6:37439000-37452200	Strong transcription	HepG2	liver
33	chr6:37439200-37451600	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr6:37439200-37452000	Strong transcription	Pancreas	Pancrea
35	chr6:37439200-37453000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:37439200-37456400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:37439200-37456400	Strong transcription	Fetal Intestine Small	intestine
38	chr6:37439400-37452200	Strong transcription	NHLF	lung
39	chr6:37441600-37452000	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:37441800-37451800	Strong transcription	Liver	Liver
41	chr6:37441800-37452000	Strong transcription	Esophagus	oesophagus
42	chr6:37441800-37452600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:37441800-37452600	Strong transcription	Gastric	stomach
44	chr6:37441800-37454400	Strong transcription	Adipose Nuclei	Adipose
45	chr6:37442000-37451800	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:37442000-37458800	Weak transcription	HUVEC	blood vessel
47	chr6:37443600-37466600	Weak transcription	A549	lung
48	chr6:37444600-37451800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:37445200-37451800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:37445600-37452000	Strong transcription	Brain Substantia Nigra	brain

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