Variant report

Variant	rs561526216
Chromosome Location	chr8:11504028-11504029
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv968504	chr8:11503821-11515422	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11500600-11504200	Enhancers	Fetal Heart	heart
2	chr8:11502200-11504600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:11502400-11509000	Weak transcription	Gastric	stomach
4	chr8:11502400-11515400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:11502800-11505000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr8:11503400-11504200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:11503400-11504200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:11503400-11504600	Enhancers	Fetal Intestine Large	intestine
9	chr8:11503600-11504200	Enhancers	Duodenum Mucosa	Duodenum
10	chr8:11503600-11504200	Bivalent Enhancer	NHEK	skin
11	chr8:11503600-11504600	Bivalent Enhancer	Fetal Intestine Small	intestine
12	chr8:11503600-11509400	Weak transcription	Right Atrium	heart
13	chr8:11504000-11504600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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