Variant report

Variant	rs561528507
Chromosome Location	chr11:49836635-49836636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:49836586-49836636	A549	lung:	n/a
2	chr11:49836586-49836636	ProgFib	skin:	n/a
3	chr11:49836586-49836636	ovcar-3	ovarian:	n/a
4	chr11:49836586-49836636	RPTEC	kidney:	n/a
5	chr11:49836586-49836636	MCF-7	breast:	n/a
6	chr11:49836586-49836636	IMR90	lung:	fetal
7	chr11:49836586-49836636	AG04450	lung:	fetal
8	chr11:49836586-49836636	T-47D	breast:	n/a
9	chr11:49836586-49836636	K562	blood:	n/a
10	chr11:49836586-49836636	NHDF-neo	bronchial:	n/a
11	chr11:49836586-49836636	CMK	blood:	n/a
12	chr11:49836586-49836636	HRE	kidney:	n/a
13	chr11:49836586-49836636	GM06990	blood:	n/a
14	chr11:49836586-49836636	HCT-116	colon:	n/a
15	chr11:49836586-49836636	AG09309	skin:	n/a
16	chr11:49836586-49836636	PrEC	prostate:	n/a
17	chr11:49836586-49836636	GM12892	blood:	n/a
18	chr11:49836586-49836636	HIPEpiC	eye:	n/a
19	chr11:49836586-49836636	HepG2	liver:	n/a
20	chr11:49836586-49836636	Hela-S3	cervix:	n/a
21	chr11:49836586-49836636	HRCEpiC	kidney:	n/a
22	chr11:49836586-49836636	GM19239	blood:	n/a
23	chr11:49836586-49836636	SAEC	small airway:	n/a
24	chr11:49836586-49836636	GM12878	blood:	n/a
25	chr11:49836586-49836636	MCF10A-Er-Src	breast:	n/a
26	chr11:49836586-49836636	Caco-2	colon:	n/a
27	chr11:49836586-49836636	HEEpiC	esophagus:	n/a
28	chr11:49836586-49836636	NH-A	brain:	n/a
29	chr11:49836586-49836636	NHBE	bronchial:	n/a
30	chr11:49836586-49836636	Jurkat	blood:	n/a
31	chr11:49836586-49836636	AG09319	gingival:	n/a
32	chr11:49836586-49836636	AoSMC	blood vessel:	n/a
33	chr11:49836586-49836636	PFSK-1	brain:	n/a
34	chr11:49836586-49836636	H1-hESC	embryonic stem cell:	embryo
35	chr11:49836586-49836636	NT2-D1	testis:	n/a
36	chr11:49836586-49836636	ECC-1	luminal epithelium:	n/a
37	chr11:49836586-49836636	GM12891	blood:	n/a
38	chr11:49836586-49836636	LNCaP	prostate:	n/a
39	chr11:49836586-49836636	HL-60	blood:	n/a
40	chr11:49836586-49836636	HRPEpiC	eye:	n/a
41	chr11:49836586-49836636	HCM	heart:	n/a
42	chr11:49836586-49836636	HPAEpiC	pulmonary alveolar:	n/a
43	chr11:49836586-49836636	PANC-1	pancreas:	n/a
44	chr11:49836586-49836636	HMEC	breast:	n/a
45	chr11:49836586-49836636	AG04449	skin:	fetal
46	chr11:49836586-49836636	HCPEpiC	choroid plexus:	n/a
47	chr11:49836586-49836636	HCF	heart:	n/a
48	chr11:49836586-49836636	SK-N-MC	brain:	n/a
49	chr11:49836586-49836636	AG10803	skin:	n/a
50	chr11:49836586-49836636	HEK293	kidney:	embryo

No data

Variant related genes	Relation type
ENSG00000254487	CpG island

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv897491	chr11:49498923-50058422	ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2757443	chr11:49581925-49862647	Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
5	esv2759826	chr11:49581925-49862647	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
6	nsv897493	chr11:49596079-49862647	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
7	nsv832147	chr11:49662076-49843391	Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv1051021	chr11:49692184-50658777	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	esv2760533	chr11:49699567-50025986	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv1035961	chr11:49727385-50023022	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv33425	chr11:49732291-50058422	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	nsv1035638	chr11:49739352-50025974	Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	nsv1043841	chr11:49746568-49862647	Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
14	nsv1037200	chr11:49757490-50023022	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv1043688	chr11:49766149-49852028	Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
16	nsv1045103	chr11:49769791-50022107	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv1048979	chr11:49787157-49862647	Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
18	nsv1048074	chr11:49823455-50302232	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
19	nsv975177	chr11:49829555-49845180	ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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