Variant report

Variant	rs56153183
Chromosome Location	chr8:104844903-104844904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 216 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:206)

rs_ID	r²[population]
rs10505048	1.00[AFR][1000 genomes]
rs10505049	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10505050	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10505053	0.82[AMR][1000 genomes]
rs11773987	0.82[AMR][1000 genomes]
rs11774671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11774950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11777910	0.82[AMR][1000 genomes]
rs11778485	0.82[AMR][1000 genomes]
rs11779039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779045	1.00[AFR][1000 genomes]
rs11779406	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11779683	0.82[AMR][1000 genomes]
rs11779973	1.00[AFR][1000 genomes]
rs11780689	1.00[AFR][1000 genomes]
rs11781707	1.00[AFR][1000 genomes]
rs11782394	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11782470	0.82[AMR][1000 genomes]
rs11783512	0.82[AMR][1000 genomes]
rs11783737	1.00[AFR][1000 genomes]
rs11783738	0.82[AMR][1000 genomes]
rs11783859	0.82[AMR][1000 genomes]
rs11784228	0.82[AMR][1000 genomes]
rs11786671	0.82[AMR][1000 genomes]
rs11787103	0.82[AMR][1000 genomes]
rs13250371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13251836	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13252533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13252571	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13254156	1.00[AFR][1000 genomes]
rs13255888	1.00[AFR][1000 genomes]
rs13256235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13257740	1.00[AFR][1000 genomes]
rs13262235	1.00[AFR][1000 genomes]
rs13263814	1.00[AFR][1000 genomes]
rs13265220	1.00[AFR][1000 genomes]
rs13265448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13269655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13273311	1.00[AFR][1000 genomes]
rs13275465	1.00[AFR][1000 genomes]
rs13275964	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13278466	1.00[AFR][1000 genomes]
rs13280499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13281460	1.00[AFR][1000 genomes]
rs1426294	1.00[AFR][1000 genomes]
rs1521063	1.00[AFR][1000 genomes]
rs17237727	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17238125	0.82[AMR][1000 genomes]
rs17239100	0.82[AMR][1000 genomes]
rs17810092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17817023	0.82[AMR][1000 genomes]
rs17817071	0.82[AMR][1000 genomes]
rs17817125	0.82[AMR][1000 genomes]
rs17817381	0.82[AMR][1000 genomes]
rs17817645	0.82[AMR][1000 genomes]
rs17817675	0.82[AMR][1000 genomes]
rs17817711	0.82[AMR][1000 genomes]
rs17817783	0.82[AMR][1000 genomes]
rs2003	0.82[AMR][1000 genomes]
rs2111492	1.00[AFR][1000 genomes]
rs2132643	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2173080	0.82[AMR][1000 genomes]
rs28794838	1.00[AFR][1000 genomes]
rs2935295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2935297	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2935298	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34273302	1.00[AFR][1000 genomes]
rs34322085	1.00[AFR][1000 genomes]
rs34330341	1.00[AFR][1000 genomes]
rs34450887	1.00[AFR][1000 genomes]
rs34503807	1.00[AFR][1000 genomes]
rs34684719	1.00[AFR][1000 genomes]
rs34903423	1.00[AFR][1000 genomes]
rs35078015	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35104198	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35370013	1.00[AFR][1000 genomes]
rs35391571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35438751	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35519709	1.00[AFR][1000 genomes]
rs35692918	1.00[AFR][1000 genomes]
rs35802116	1.00[AFR][1000 genomes]
rs35888047	1.00[AFR][1000 genomes]
rs36000561	1.00[AFR][1000 genomes]
rs4001966	1.00[AFR][1000 genomes]
rs41414649	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55662672	0.82[AMR][1000 genomes]
rs55682817	0.82[AMR][1000 genomes]
rs55685114	0.82[AMR][1000 genomes]
rs55726655	0.82[AMR][1000 genomes]
rs55732523	0.82[AMR][1000 genomes]
rs55738203	0.82[AMR][1000 genomes]
rs55746407	0.82[AMR][1000 genomes]
rs55759306	0.82[AMR][1000 genomes]
rs55773317	0.82[AMR][1000 genomes]
rs55807810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55831990	0.82[AMR][1000 genomes]
rs55835805	0.82[AMR][1000 genomes]
rs55840106	0.82[AMR][1000 genomes]
rs55892562	0.82[AMR][1000 genomes]
rs55918633	0.82[AMR][1000 genomes]
rs55927269	0.82[AMR][1000 genomes]
rs55933208	0.82[AMR][1000 genomes]
rs55947402	0.82[AMR][1000 genomes]
rs55949255	0.82[AMR][1000 genomes]
rs56086734	0.82[AMR][1000 genomes]
rs56146220	0.82[AMR][1000 genomes]
rs56238414	0.82[AMR][1000 genomes]
rs56239440	0.82[AMR][1000 genomes]
rs56275097	0.82[AMR][1000 genomes]
rs56287891	0.82[AMR][1000 genomes]
rs56309866	0.82[AMR][1000 genomes]
rs56317008	0.82[AMR][1000 genomes]
rs56356266	0.82[AMR][1000 genomes]
rs56386117	0.82[AMR][1000 genomes]
rs56394923	0.82[AMR][1000 genomes]
rs56409041	0.82[AMR][1000 genomes]
rs61280722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67432617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68142003	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6980714	1.00[AFR][1000 genomes]
rs6981288	0.82[AMR][1000 genomes]
rs6985492	0.82[AMR][1000 genomes]
rs6998869	0.82[AMR][1000 genomes]
rs6998963	0.82[AMR][1000 genomes]
rs7010706	0.82[AMR][1000 genomes]
rs7016724	1.00[AFR][1000 genomes]
rs71520840	1.00[AFR][1000 genomes]
rs71520842	1.00[AFR][1000 genomes]
rs72679487	1.00[AFR][1000 genomes]
rs72679490	1.00[AFR][1000 genomes]
rs72679498	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72679499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72681308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72681322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72681351	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72681354	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72681355	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72681356	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72681362	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72681364	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72681365	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72681366	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72681368	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72681371	0.82[AMR][1000 genomes]
rs72681372	0.82[AMR][1000 genomes]
rs72681373	0.82[AMR][1000 genomes]
rs72681374	0.82[AMR][1000 genomes]
rs72681375	0.82[AMR][1000 genomes]
rs72681376	0.82[AMR][1000 genomes]
rs72681377	0.82[AMR][1000 genomes]
rs72681380	0.82[AMR][1000 genomes]
rs72681383	0.82[AMR][1000 genomes]
rs72681385	0.82[AMR][1000 genomes]
rs72681388	0.82[AMR][1000 genomes]
rs72681389	0.82[AMR][1000 genomes]
rs72681392	0.82[AMR][1000 genomes]
rs72681393	0.82[AMR][1000 genomes]
rs72681394	0.82[AMR][1000 genomes]
rs72681395	0.82[AMR][1000 genomes]
rs72681397	0.82[AMR][1000 genomes]
rs72681398	0.82[AMR][1000 genomes]
rs72681402	0.82[AMR][1000 genomes]
rs72683103	0.82[AMR][1000 genomes]
rs72683104	0.82[AMR][1000 genomes]
rs72683106	0.82[AMR][1000 genomes]
rs72683107	0.82[AMR][1000 genomes]
rs72683108	0.82[AMR][1000 genomes]
rs72683109	0.82[AMR][1000 genomes]
rs72683110	0.82[AMR][1000 genomes]
rs72683111	0.82[AMR][1000 genomes]
rs72683112	0.82[AMR][1000 genomes]
rs72683114	0.82[AMR][1000 genomes]
rs72683115	0.82[AMR][1000 genomes]
rs72683116	0.82[AMR][1000 genomes]
rs72683117	0.82[AMR][1000 genomes]
rs72683118	0.82[AMR][1000 genomes]
rs72683119	0.82[AMR][1000 genomes]
rs72683120	0.82[AMR][1000 genomes]
rs72683121	0.82[AMR][1000 genomes]
rs72683122	0.82[AMR][1000 genomes]
rs72683123	0.82[AMR][1000 genomes]
rs72683124	0.82[AMR][1000 genomes]
rs72683125	0.82[AMR][1000 genomes]
rs72683126	0.82[AMR][1000 genomes]
rs72683127	0.82[AMR][1000 genomes]
rs72683128	0.82[AMR][1000 genomes]
rs72683130	0.82[AMR][1000 genomes]
rs72683134	0.82[AMR][1000 genomes]
rs72683135	0.82[AMR][1000 genomes]
rs72683143	0.82[AMR][1000 genomes]
rs72683144	0.82[AMR][1000 genomes]
rs72683149	0.82[AMR][1000 genomes]
rs72683151	0.82[AMR][1000 genomes]
rs72683155	0.82[AMR][1000 genomes]
rs72683156	0.82[AMR][1000 genomes]
rs72683159	0.82[AMR][1000 genomes]
rs72683160	0.82[AMR][1000 genomes]
rs72683161	0.82[AMR][1000 genomes]
rs72683175	0.82[AMR][1000 genomes]
rs7821195	0.82[AMR][1000 genomes]
rs7825968	1.00[AFR][1000 genomes]
rs7832993	1.00[AFR][1000 genomes]
rs7836764	1.00[AFR][1000 genomes]
rs7836827	1.00[AFR][1000 genomes]
rs7839328	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9694950	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1023048	chr8:104355188-104872701	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv539705	chr8:104355188-104872701	ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1021345	chr8:104361854-104879684	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1032085	chr8:104362187-104878345	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	esv2752692	chr8:104520824-105123824	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1016387	chr8:104578389-104931853	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104805800-104858600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:104843400-104845600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:104843600-104845000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:104843600-104845600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:104843600-104845600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:104843800-104845600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:104844800-104845400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:104844800-104845400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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