Variant report

Variant	rs561559204
Chromosome Location	chr19:39728077-39728078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39727742..39730631-chr19:39743095..39745930,2	K562	blood:
2	chr19:39727142..39728696-chr19:39832975..39834941,2	K562	blood:

Variant related genes	Relation type
ENSG00000179134	Chromatin interaction
ENSG00000130755	Chromatin interaction
ENSG00000213926	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833829	chr19:39569681-39730777	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv432048	chr19:39572060-39850060	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv518540	chr19:39697974-39731783	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv833830	chr19:39709538-39837846	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv911678	chr19:39710903-39763765	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1796501	chr19:39723520-39740868	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv3377837	chr19:39727555-39735103	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv3510603	chr19:39727606-39735042	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv3510604	chr19:39727606-39735042	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39721400-39728200	Weak transcription	Stomach Mucosa	stomach
2	chr19:39725600-39728200	Weak transcription	Primary T cells from cord blood	blood
3	chr19:39726600-39729400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr19:39726800-39728200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr19:39726800-39729200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr19:39727000-39728200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr19:39727000-39728200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:39727000-39728400	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr19:39727200-39728200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr19:39727200-39728200	Enhancers	Pancreas	Pancrea
11	chr19:39727200-39729000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr19:39727200-39729200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr19:39727200-39729800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr19:39727400-39728200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr19:39727400-39728400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr19:39727400-39728400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr19:39728000-39728200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr19:39728000-39728200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr19:39728000-39728400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr19:39728000-39728400	Enhancers	Gastric	stomach
21	chr19:39728000-39728600	Flanking Active TSS	GM12878-XiMat	blood
22	chr19:39728000-39728800	Enhancers	Spleen	Spleen
23	chr19:39728000-39729000	Enhancers	Primary hematopoietic stem cells	blood
24	chr19:39728000-39729000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr19:39728000-39729200	Enhancers	Primary B cells from peripheral blood	blood
26	chr19:39728000-39729200	Enhancers	Placenta	Placenta

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