Variant report

Variant	rs56156003
Chromosome Location	chr7:26590737-26590738
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10231724	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10244803	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1029556	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1029557	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1029558	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1029559	0.81[AFR][1000 genomes]
rs2016454	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2016463	0.86[AFR][1000 genomes]
rs2190188	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2391300	0.88[ASN][1000 genomes]
rs4461797	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4555996	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56104401	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs730558	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757805	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757806	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757807	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757808	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757809	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757810	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs757811	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs757812	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7788433	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs882540	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs882541	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26578800-26591600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:26582400-26592200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:26586800-26595600	Weak transcription	Fetal Kidney	kidney
4	chr7:26588000-26595000	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:26588000-26596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:26588800-26591000	Enhancers	Spleen	Spleen
7	chr7:26589000-26595800	Weak transcription	Lung	lung
8	chr7:26589600-26598000	Weak transcription	Right Atrium	heart
9	chr7:26589800-26591600	Enhancers	Hela-S3	cervix
10	chr7:26589800-26594400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:26589800-26595800	Weak transcription	Gastric	stomach
12	chr7:26590400-26590800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:26590600-26593000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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