Variant report

Variant	rs56158219
Chromosome Location	chr4:89769842-89769843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:89763902..89766661-chr4:89768609..89770489,2	K562	blood:
2	chr4:89757635..89759900-chr4:89769604..89772277,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10461165	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12640274	0.92[ASN][1000 genomes]
rs12643428	0.86[EUR][1000 genomes]
rs13115763	0.87[EUR][1000 genomes]
rs1379932	0.85[ASN][1000 genomes]
rs1379933	0.85[ASN][1000 genomes]
rs2085600	0.91[ASN][1000 genomes]
rs28767574	0.88[ASN][1000 genomes]
rs72872126	0.87[EUR][1000 genomes]
rs7660000	0.87[EUR][1000 genomes]
rs9991039	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89745000-89770800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:89745000-89775000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:89745200-89776200	Weak transcription	Aorta	Aorta
4	chr4:89752000-89778800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:89754600-89779600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:89764400-89779400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:89765000-89773200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:89765000-89779400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:89765000-89780400	Weak transcription	Ovary	ovary
10	chr4:89765000-89780600	Weak transcription	Left Ventricle	heart
11	chr4:89765200-89778200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:89765200-89780400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:89765400-89770600	Weak transcription	Placenta	Placenta
14	chr4:89765400-89780400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:89765400-89780800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:89765800-89770000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:89766000-89773400	Weak transcription	Gastric	stomach
18	chr4:89766000-89780400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:89767600-89779800	Weak transcription	Fetal Stomach	stomach
20	chr4:89767800-89773000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:89767800-89775800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:89767800-89777600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:89767800-89779600	Weak transcription	Adipose Nuclei	Adipose
24	chr4:89767800-89780400	Weak transcription	Fetal Kidney	kidney
25	chr4:89767800-89780800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:89768000-89771400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr4:89768000-89775400	Weak transcription	Hela-S3	cervix
28	chr4:89768000-89779600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:89768600-89772600	Weak transcription	Fetal Intestine Large	intestine
30	chr4:89768800-89789400	Weak transcription	Fetal Intestine Small	intestine
31	chr4:89769200-89771000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:89769200-89771200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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