Variant report

Variant	rs561584428
Chromosome Location	chr14:71133695-71133696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:71131493..71133851-chr14:71142180..71144141,3	MCF-7	breast:
2	chr14:71132212..71134545-chr14:71176290..71178585,2	MCF-7	breast:
3	chr14:71131102..71134046-chr14:71180696..71183672,2	MCF-7	breast:
4	chr14:71132610..71134964-chr14:71136906..71139013,2	MCF-7	breast:
5	chr14:71131895..71134522-chr14:71177148..71179361,2	MCF-7	breast:
6	chr14:71132335..71134677-chr14:71163007..71165293,2	MCF-7	breast:
7	chr14:71132408..71133909-chr14:71162609..71164533,2	MCF-7	breast:
8	chr14:71132270..71133949-chr14:71136536..71138156,2	MCF-7	breast:
9	chr14:71105533..71111408-chr14:71129587..71135247,9	MCF-7	breast:
10	chr14:71132827..71135159-chr14:71171125..71172879,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000245466	Chromatin interaction
ENSG00000133985	Chromatin interaction
ENSG00000259115	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1831100	chr14:71132235-71139550	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71112800-71140000	Weak transcription	Fetal Brain Male	brain
2	chr14:71115200-71137000	Weak transcription	Fetal Stomach	stomach
3	chr14:71122800-71136600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:71122800-71138000	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:71127400-71134800	Enhancers	Placenta	Placenta
6	chr14:71127600-71134400	Enhancers	Spleen	Spleen
7	chr14:71127800-71134400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:71128400-71140800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:71128600-71134000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr14:71128600-71134400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:71128800-71138000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:71129000-71137000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:71129200-71134400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:71129200-71134600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr14:71129800-71134400	Enhancers	NHLF	lung
16	chr14:71129800-71134600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:71130200-71136600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr14:71130800-71134600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:71131000-71134000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr14:71131000-71134400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr14:71131200-71134200	Weak transcription	Fetal Brain Female	brain
22	chr14:71131200-71139600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr14:71131400-71133800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr14:71131400-71134600	Enhancers	HMEC	breast
25	chr14:71131600-71138000	Weak transcription	Aorta	Aorta
26	chr14:71131800-71133800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr14:71131800-71135600	Strong transcription	Brain Germinal Matrix	brain
28	chr14:71132000-71133800	Enhancers	Placenta Amnion	Placenta Amnion
29	chr14:71132000-71133800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr14:71132200-71133800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr14:71132200-71133800	Enhancers	Thymus	Thymus
32	chr14:71132400-71134400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:71132800-71133800	Enhancers	NHDF-Ad	bronchial
34	chr14:71132800-71133800	Enhancers	NHEK	skin
35	chr14:71132800-71134000	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr14:71132800-71137000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:71132800-71138000	Genic enhancers	Primary B cells from peripheral blood	blood
38	chr14:71133000-71135800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:71133000-71136600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:71133000-71137400	Weak transcription	Lung	lung
41	chr14:71133000-71138200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:71133200-71133800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:71133200-71134000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr14:71133200-71134000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:71133200-71134200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr14:71133200-71134200	Weak transcription	Esophagus	oesophagus
47	chr14:71133200-71134800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:71133200-71134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr14:71133200-71135000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr14:71133200-71137000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links