Variant report

Variant	rs561585279
Chromosome Location	chr10:99078304-99078305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:99078179-99080438	H1-neurons	neurons:	n/a	chr10:99079177-99079190
2	JUND	chr10:99078291-99079295	GM12878	blood:	n/a	chr10:99078982-99078991
3	HCFC1	chr10:99078294-99079477	Hela-S3	cervix:	n/a	n/a
4	MXI1	chr10:99078295-99079370	IMR90	lung:	n/a	n/a
5	MXI1	chr10:99078297-99080387	SK-N-SH	brain:	n/a	n/a
6	TCF12	chr10:99078297-99079147	ECC-1	luminal epithelium:	n/a	chr10:99078996-99079005
7	POLR2A	chr10:99078283-99080451	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:99078212..99079127-chr2:113342181..113342990,2	Hela-S3	cervix:
2	chr10:99050343..99055587-chr10:99077475..99082102,7	MCF-7	breast:
3	chr10:99051582..99054067-chr10:99077169..99079188,3	K562	blood:
4	chr10:99051582..99055310-chr10:99077169..99083058,6	K562	blood:
5	chr1:234746282..234747092-chr10:99078304..99078804,2	Hela-S3	cervix:
6	chr10:99066690..99071389-chr10:99076606..99080814,5	MCF-7	breast:

Variant related genes	Relation type
FRAT1	TF binding region
ENSG00000237169	Chromatin interaction
ENSG00000269891	Chromatin interaction
ENSG00000125611	Chromatin interaction
ENSG00000213390	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1041614	chr10:98928281-99083056	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv3375506	chr10:99078187-99080735	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99075600-99078400	Weak transcription	Lung	lung
2	chr10:99077600-99078400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:99077600-99078400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:99077600-99078400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:99077600-99079800	Active TSS	Fetal Intestine Large	intestine
6	chr10:99077600-99079800	Active TSS	Hela-S3	cervix
7	chr10:99077600-99080200	Active TSS	Brain Hippocampus Middle	brain
8	chr10:99077800-99078400	Weak transcription	K562	blood
9	chr10:99077800-99080000	Active TSS	Primary T cells from cord blood	blood
10	chr10:99078000-99078800	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr10:99078000-99079600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
12	chr10:99078000-99081200	Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr10:99078000-99081400	Active TSS	Monocytes-CD14+_RO01746	blood
14	chr10:99078200-99078400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:99078200-99078400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:99078200-99078400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:99078200-99078400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:99078200-99078400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:99078200-99078400	Active TSS	Liver	Liver
20	chr10:99078200-99078400	Active TSS	Brain Germinal Matrix	brain
21	chr10:99078200-99078400	Enhancers	Pancreas	Pancrea
22	chr10:99078200-99078400	Active TSS	HepG2	liver
23	chr10:99078200-99078600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr10:99078200-99078600	Flanking Active TSS	Primary B cells from peripheral blood	blood
25	chr10:99078200-99078600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr10:99078200-99078600	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr10:99078200-99078600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr10:99078200-99078600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr10:99078200-99078600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:99078200-99078600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr10:99078200-99078600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:99078200-99078600	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr10:99078200-99078600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
34	chr10:99078200-99078600	Flanking Active TSS	Placenta	Placenta
35	chr10:99078200-99078600	Flanking Active TSS	Fetal Thymus	thymus
36	chr10:99078200-99078600	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr10:99078200-99078600	Flanking Active TSS	Dnd41	blood
38	chr10:99078200-99078800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:99078200-99078800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:99078200-99079400	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
41	chr10:99078200-99079400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
42	chr10:99078200-99079600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:99078200-99079600	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr10:99078200-99079600	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr10:99078200-99079600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr10:99078200-99079600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:99078200-99079600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:99078200-99079600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:99078200-99079600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:99078200-99079600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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