Variant report

Variant	rs56158531
Chromosome Location	chr6:166824328-166824329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11962404	0.91[ASN][1000 genomes]
rs11962417	0.91[ASN][1000 genomes]
rs11965456	0.91[ASN][1000 genomes]
rs11965461	0.91[ASN][1000 genomes]
rs11965532	0.91[ASN][1000 genomes]
rs11967213	0.91[ASN][1000 genomes]
rs11967228	0.91[ASN][1000 genomes]
rs61427273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73267243	0.91[ASN][1000 genomes]
rs73267244	0.91[ASN][1000 genomes]
rs7743729	0.91[ASN][1000 genomes]
rs7753745	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv3437905	chr6:166820362-166824660	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166797600-166835800	Weak transcription	Right Atrium	heart
2	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
3	chr6:166814400-166837200	Weak transcription	Fetal Heart	heart
4	chr6:166814600-166824800	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:166816600-166827000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:166816600-166833000	Weak transcription	HSMM	muscle
7	chr6:166816800-166825000	Weak transcription	NHLF	lung
8	chr6:166816800-166832400	Weak transcription	NH-A	brain
9	chr6:166817000-166829000	Weak transcription	NHDF-Ad	bronchial
10	chr6:166817200-166833800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:166820200-166825000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:166820600-166829400	Weak transcription	HSMMtube	muscle
13	chr6:166821000-166825000	Weak transcription	Adipose Nuclei	Adipose
14	chr6:166821000-166832200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:166821400-166825000	Enhancers	Fetal Thymus	thymus
16	chr6:166821600-166825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:166821600-166829200	Weak transcription	Fetal Kidney	kidney
18	chr6:166821800-166829600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr6:166821800-166833800	Weak transcription	Stomach Mucosa	stomach
20	chr6:166821800-166838600	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr6:166822000-166825400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:166822000-166829000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:166822000-166833800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:166822000-166837200	Strong transcription	Fetal Stomach	stomach
25	chr6:166822000-166838200	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:166822200-166827400	Strong transcription	Brain Germinal Matrix	brain
27	chr6:166822200-166830000	Strong transcription	Brain Cingulate Gyrus	brain
28	chr6:166822200-166836000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:166822200-166837200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:166822200-166838600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:166822400-166824800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:166822400-166826800	Weak transcription	HUVEC	blood vessel
33	chr6:166822400-166838400	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:166822400-166838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:166822400-166838600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:166822600-166824800	Weak transcription	Spleen	Spleen
37	chr6:166822600-166826200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:166822600-166829400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:166822800-166825000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:166822800-166825000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:166822800-166825600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:166822800-166825600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:166822800-166825600	Weak transcription	Right Ventricle	heart
44	chr6:166822800-166826000	Weak transcription	Brain Angular Gyrus	brain
45	chr6:166822800-166826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:166822800-166827000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:166822800-166829400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:166822800-166829400	Weak transcription	Fetal Brain Male	brain
49	chr6:166822800-166832000	Weak transcription	Aorta	Aorta
50	chr6:166822800-166832800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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