Variant report

Variant	rs561585343
Chromosome Location	chr5:106982938-106982939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106969600-106988600	Weak transcription	Fetal Stomach	stomach
2	chr5:106970200-106985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:106972200-106986000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:106972800-106983400	Weak transcription	Fetal Lung	lung
5	chr5:106976600-106984600	Weak transcription	A549	lung
6	chr5:106976600-106987200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:106976600-106991600	Weak transcription	Left Ventricle	heart
8	chr5:106979200-106985800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:106979400-106985600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:106979400-106988600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:106981200-106983800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr5:106981600-106984400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:106981800-106985800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr5:106982000-106983400	Weak transcription	HMEC	breast
15	chr5:106982400-106983200	Weak transcription	Fetal Heart	heart
16	chr5:106982400-106983400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:106982400-106985800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:106982400-106989000	Weak transcription	Stomach Mucosa	stomach
19	chr5:106982400-106990200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:106982600-106983200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:106982600-106983400	Weak transcription	NHEK	skin

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