Variant report

Variant	rs561606981
Chromosome Location	chr3:84597784-84597785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007008	chr3:84069044-84653896	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv536612	chr3:84069044-84653896	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv460743	chr3:84094818-84644186	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv590814	chr3:84094818-84644186	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2760745	chr3:84208364-84783259	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv998578	chr3:84521514-84773582	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv536615	chr3:84521514-84773582	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv460744	chr3:84526413-84630305	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv590850	chr3:84526413-84630305	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3327132	chr3:84597762-84601460	Flanking Active TSS Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:84596200-84597800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:84597000-84598400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:84597200-84597800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:84597200-84597800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:84597200-84597800	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr3:84597200-84597800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:84597200-84597800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:84597200-84597800	Enhancers	Brain Substantia Nigra	brain
9	chr3:84597200-84597800	Flanking Active TSS	HepG2	liver
10	chr3:84597200-84598400	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr3:84597200-84598400	Active TSS	A549	lung
12	chr3:84597400-84597800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:84597400-84597800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:84597400-84597800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:84597400-84597800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr3:84597400-84597800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr3:84597400-84597800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:84597400-84597800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:84597400-84597800	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr3:84597400-84597800	Enhancers	Brain Hippocampus Middle	brain
21	chr3:84597400-84597800	Enhancers	Placenta	Placenta
22	chr3:84597400-84597800	Flanking Active TSS	Pancreas	Pancrea
23	chr3:84597400-84598000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:84597600-84597800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:84597600-84598000	Active TSS	Liver	Liver

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