Variant report

Variant	rs561611216
Chromosome Location	chr12:105669868-105669869
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1044450	chr12:105668451-105682822	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105659600-105672200	Weak transcription	Aorta	Aorta
2	chr12:105664600-105672200	Weak transcription	HSMM	muscle
3	chr12:105665000-105674200	Weak transcription	Osteobl	bone
4	chr12:105665600-105674800	Weak transcription	NHDF-Ad	bronchial
5	chr12:105667600-105670000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:105667800-105670000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:105667800-105670000	Weak transcription	NHEK	skin
8	chr12:105667800-105670200	Weak transcription	HMEC	breast
9	chr12:105668200-105671800	Weak transcription	Fetal Intestine Small	intestine
10	chr12:105668200-105674800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:105668600-105673400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:105669800-105670400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:105669800-105670600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr12:105669800-105670600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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