Variant report

Variant	rs561622933
Chromosome Location	chr14:55542585-55542586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55532764..55536002-chr14:55540824..55544423,3	MCF-7	breast:
2	chr14:55516915..55519975-chr14:55539860..55542972,3	MCF-7	breast:
3	chr14:55541558..55543377-chr14:55546059..55547718,2	K562	blood:
4	chr14:55540374..55545656-chr14:55545839..55552985,7	K562	blood:
5	chr14:55540168..55541709-chr14:55541911..55544234,2	MCF-7	breast:
6	chr14:55541160..55544026-chr14:55549457..55552985,4	K562	blood:

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3530630	chr14:55542536-55543793	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	esv3530631	chr14:55542536-55543793	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55544200	Weak transcription	Right Atrium	heart
2	chr14:55530000-55544200	Weak transcription	Right Ventricle	heart
3	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55530800-55544200	Weak transcription	Colonic Mucosa	Colon
5	chr14:55531000-55544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:55532400-55544000	Weak transcription	Esophagus	oesophagus
7	chr14:55535000-55544400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:55535600-55544000	Weak transcription	A549	lung
9	chr14:55536600-55543000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:55536600-55544200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:55538000-55542800	Enhancers	HSMM	muscle
12	chr14:55538000-55543000	Enhancers	HMEC	breast
13	chr14:55538200-55542800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:55538400-55543000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:55539200-55543800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:55539200-55544400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:55539400-55542800	Enhancers	Primary B cells from peripheral blood	blood
18	chr14:55539400-55542800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:55539400-55543200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:55539400-55544000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:55539600-55543200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:55539600-55543600	Weak transcription	Placenta	Placenta
23	chr14:55539600-55543800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:55539600-55543800	Weak transcription	Fetal Intestine Large	intestine
25	chr14:55539600-55544400	Weak transcription	Left Ventricle	heart
26	chr14:55539800-55543600	Weak transcription	Fetal Intestine Small	intestine
27	chr14:55540200-55542800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr14:55540200-55544000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:55540400-55542800	Enhancers	HSMMtube	muscle
30	chr14:55540400-55542800	Enhancers	NH-A	brain
31	chr14:55540600-55543000	Enhancers	Hela-S3	cervix
32	chr14:55541200-55542800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr14:55541200-55543000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:55541200-55543000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:55541400-55542600	Enhancers	Duodenum Mucosa	Duodenum
36	chr14:55541400-55542800	Enhancers	Primary T cells fromperipheralblood	blood
37	chr14:55541400-55543000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:55541600-55543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr14:55541600-55543800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:55541600-55544000	Weak transcription	Fetal Muscle Leg	muscle
41	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:55541800-55542600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:55541800-55542800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:55541800-55542800	Enhancers	NHLF	lung
45	chr14:55541800-55542800	Enhancers	Osteobl	bone
46	chr14:55541800-55543000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:55541800-55543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:55541800-55543800	Weak transcription	Stomach Mucosa	stomach
49	chr14:55541800-55543800	Enhancers	NHEK	skin
50	chr14:55541800-55544000	Weak transcription	H9 Cell Line	embryonic stem cell

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