Variant report

Variant	rs561627768
Chromosome Location	chr2:191024705-191024706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv526659	chr2:191023961-191027133	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191023000-191025200	Enhancers	Brain Substantia Nigra	brain
2	chr2:191023200-191026200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:191023400-191024800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr2:191023400-191025400	Enhancers	Brain Hippocampus Middle	brain
5	chr2:191023600-191025400	Enhancers	Adipose Nuclei	Adipose
6	chr2:191023600-191026800	Enhancers	Osteobl	bone
7	chr2:191023800-191025400	Enhancers	NHDF-Ad	bronchial
8	chr2:191024000-191025000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr2:191024000-191025000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:191024000-191025000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:191024200-191024800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:191024200-191024800	Weak transcription	GM12878-XiMat	blood
13	chr2:191024200-191025000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:191024200-191025000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:191024200-191025200	Enhancers	NHEK	skin
16	chr2:191024400-191024800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:191024400-191024800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:191024400-191024800	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr2:191024400-191025000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:191024400-191042200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:191024600-191025000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr2:191024600-191025200	Enhancers	Brain Anterior Caudate	brain
23	chr2:191024600-191025400	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links