Variant report

Variant	rs56162799
Chromosome Location	chr10:50858429-50858430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10745264	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241715	1.00[EUR][1000 genomes]
rs12246493	1.00[EUR][1000 genomes]
rs12253373	1.00[EUR][1000 genomes]
rs12259424	1.00[EUR][1000 genomes]
rs2165031	1.00[EUR][1000 genomes]
rs55776475	1.00[EUR][1000 genomes]
rs74131114	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74131115	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7895569	1.00[EUR][1000 genomes]
rs7912483	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1037405	chr10:50800817-50940545	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50847000-50860600	Weak transcription	Right Atrium	heart
2	chr10:50854800-50859000	Enhancers	Fetal Thymus	thymus
3	chr10:50856200-50858600	Enhancers	Thymus	Thymus
4	chr10:50856400-50858800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50856400-50858800	Flanking Active TSS	Dnd41	blood
6	chr10:50856600-50859600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:50857000-50860000	Weak transcription	Spleen	Spleen
8	chr10:50857200-50858600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr10:50857800-50859200	Weak transcription	Fetal Intestine Large	intestine
10	chr10:50858000-50859400	Weak transcription	Fetal Intestine Small	intestine
11	chr10:50858200-50862400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:50858400-50865000	Strong transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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