Variant report

Variant	rs561632156
Chromosome Location	chr6:39066884-39066885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39065425..39068322-chr6:39071834..39073709,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761050	chr6:39066867-39072034	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39021200-39072000	Weak transcription	Gastric	stomach
2	chr6:39027400-39073000	Weak transcription	Pancreas	Pancrea
3	chr6:39043400-39082000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:39053000-39072400	Weak transcription	Brain Germinal Matrix	brain
5	chr6:39055200-39069800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:39058000-39068200	Weak transcription	Thymus	Thymus
7	chr6:39058400-39071200	Weak transcription	Psoas Muscle	Psoas
8	chr6:39058400-39072000	Weak transcription	Left Ventricle	heart
9	chr6:39058400-39072600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:39058400-39073000	Weak transcription	Lung	lung
11	chr6:39060400-39073200	Weak transcription	Fetal Heart	heart
12	chr6:39060600-39072800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:39062000-39072000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:39062600-39072200	Weak transcription	Small Intestine	intestine
15	chr6:39063400-39069600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:39063800-39072200	Weak transcription	Liver	Liver
17	chr6:39063800-39076400	Weak transcription	HepG2	liver
18	chr6:39064800-39076800	Weak transcription	Aorta	Aorta
19	chr6:39065000-39072400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:39065200-39071200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:39065400-39067600	Weak transcription	Fetal Lung	lung
22	chr6:39066400-39072000	Weak transcription	Right Ventricle	heart
23	chr6:39066800-39077200	Weak transcription	Brain Anterior Caudate	brain

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