Variant report

Variant	rs561634349
Chromosome Location	chr5:70493586-70493587
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GTF2H2-7	chr5:70493473-70493614	NONHSAT102003
2	lnc-GTF2H2-7	chr5:70493473-70493608	NONHSAT102005

Extended variants
information (count: 54 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805631	chr5:69705362-70657888	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv533404	chr5:69732162-70587019	Genic enhancers Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv918008	chr5:69732191-70587018	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1067570	chr5:69732192-70587018	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv491621	chr5:69732192-70587018	Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv529287	chr5:69732192-70716662	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv881986	chr5:69830067-70649421	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv21405	chr5:69830214-70497993	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv491966	chr5:69843629-70587018	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv497817	chr5:69843651-70587019	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv881997	chr5:69886621-70498086	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv882000	chr5:69924203-70606506	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv882004	chr5:69945222-70606506	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv882008	chr5:70029358-70498086	Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
15	nsv882024	chr5:70072721-70498086	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
16	esv15058	chr5:70087253-70497993	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv882033	chr5:70096904-70498086	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
18	nsv882034	chr5:70096904-70606506	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
19	nsv882041	chr5:70109362-70498086	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
20	nsv882101	chr5:70196970-70498086	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
21	nsv917254	chr5:70247769-70587019	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
22	nsv1033366	chr5:70254883-70710447	Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
23	nsv882135	chr5:70275720-70689452	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
24	nsv433373	chr5:70291250-70649421	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
25	nsv882145	chr5:70316072-70498086	Weak transcription Enhancers Strong transcription	TF binding region CpG island lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
26	nsv882148	chr5:70337808-70498086	Weak transcription Enhancers Strong transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
27	nsv882149	chr5:70337808-70627412	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
28	nsv882152	chr5:70356098-70498086	Enhancers Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
29	esv16061	chr5:70368885-70498283	Weak transcription Enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv533712	chr5:70369930-70657718	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv882153	chr5:70376491-70498086	Enhancers Weak transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
32	nsv882155	chr5:70379466-70498086	Weak transcription Enhancers	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
33	nsv882156	chr5:70379466-70664663	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
34	nsv533636	chr5:70386570-70663068	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
35	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
36	esv1813375	chr5:70391749-70663300	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
37	esv1846606	chr5:70391749-70663300	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
38	esv1812997	chr5:70391881-70657688	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
39	nsv882158	chr5:70398523-70498086	Weak transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
40	esv3512140	chr5:70412546-70499044	Weak transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
41	esv3512142	chr5:70412546-70499044	Weak transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
42	nsv882160	chr5:70415916-70498086	Weak transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
43	esv3370942	chr5:70422446-70499044	Weak transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
44	nsv882161	chr5:70426086-70498086	Weak transcription Enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
45	nsv882162	chr5:70432748-70498086	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
46	esv1802971	chr5:70443659-70660252	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
47	esv1792558	chr5:70461915-70659556	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
48	esv3375413	chr5:70470346-70499044	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
49	esv1804508	chr5:70488704-70660252	Enhancers Genic enhancers Strong transcription Weak transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
50	esv1805483	chr5:70489943-70660252	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:70492000-70494200	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:70492000-70494200	Weak transcription	Fetal Thymus	thymus
3	chr5:70492200-70494600	Weak transcription	Dnd41	blood
4	chr5:70492400-70494800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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