Variant report

Variant	rs561640034
Chromosome Location	chr3:111857358-111857359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111851024..111853542-chr3:111855899..111858560,2	K562	blood:

Variant related genes	Relation type
ENSG00000174500	Chromatin interaction
ENSG00000261488	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111852200-111857600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:111852200-111863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111852600-111857600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:111853400-111867400	Weak transcription	Gastric	stomach
5	chr3:111854600-111858000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:111854800-111857600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:111854800-111857800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:111855000-111857400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:111855000-111857600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:111855000-111858000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:111855200-111858000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:111855400-111857600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:111855400-111858000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:111856200-111857800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:111856200-111860200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:111856200-111867400	Weak transcription	Thymus	Thymus
17	chr3:111856200-111867600	Weak transcription	Left Ventricle	heart
18	chr3:111856400-111857800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr3:111856400-111861800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:111856400-111862400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:111856600-111857600	Enhancers	GM12878-XiMat	blood
22	chr3:111856800-111857400	Enhancers	Fetal Intestine Small	intestine
23	chr3:111857000-111858400	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:111857000-111861000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr3:111857200-111860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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