Variant report

Variant	rs56165114
Chromosome Location	chr6:1625966-1625967
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr6:1623838-1626528	NT2-D1	testis:	n/a	n/a

Variant related genes	Relation type
GMDS	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73716218	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024111	chr6:1231850-1730146	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1021924	chr6:1254891-1736995	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv538082	chr6:1254891-1736995	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv917248	chr6:1365437-1627813	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1034039	chr6:1427061-1691837	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv538088	chr6:1427061-1691837	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
8	nsv1027393	chr6:1446300-1692019	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv538089	chr6:1446300-1692019	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1016859	chr6:1460020-1645819	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv883376	chr6:1535043-1635082	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
12	nsv491607	chr6:1580681-1951526	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
13	nsv1016594	chr6:1590030-1702529	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
14	nsv823394	chr6:1590091-1629146	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
15	nsv883379	chr6:1593851-1628902	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
16	nsv823395	chr6:1595031-1629521	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
17	nsv883381	chr6:1595216-1628902	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
18	nsv823396	chr6:1597359-1629106	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
19	nsv530888	chr6:1605768-1739933	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1616800-1631400	Weak transcription	Hela-S3	cervix
2	chr6:1622400-1626600	Strong transcription	HepG2	liver
3	chr6:1622600-1629000	Active TSS	Aorta	Aorta
4	chr6:1623400-1626800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:1624000-1626800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:1624200-1626000	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr6:1624200-1626000	Active TSS	Right Atrium	heart
8	chr6:1624400-1626000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:1624400-1626400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:1624400-1626600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
11	chr6:1624600-1626000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:1624600-1626000	Bivalent/Poised TSS	Brain Substantia Nigra	brain
13	chr6:1624600-1626000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
14	chr6:1624600-1626000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
15	chr6:1624800-1626000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
16	chr6:1624800-1626000	Bivalent/Poised TSS	NHEK	skin
17	chr6:1625000-1626000	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
18	chr6:1625000-1626000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
19	chr6:1625000-1626000	Active TSS	Right Ventricle	heart
20	chr6:1625200-1626000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
21	chr6:1625200-1626000	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
22	chr6:1625200-1626000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:1625200-1626000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
24	chr6:1625200-1626000	Bivalent/Poised TSS	NHDF-Ad	bronchial
25	chr6:1625200-1634000	Weak transcription	Gastric	stomach
26	chr6:1625400-1626000	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
27	chr6:1625400-1626000	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
28	chr6:1625400-1626000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
29	chr6:1625400-1626400	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
30	chr6:1625600-1626000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
31	chr6:1625600-1626000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
32	chr6:1625600-1626000	Bivalent Enhancer	Fetal Brain Male	brain
33	chr6:1625600-1626000	Bivalent Enhancer	Fetal Heart	heart
34	chr6:1625600-1626000	Bivalent/Poised TSS	NHLF	lung
35	chr6:1625600-1626200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:1625600-1627000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:1625800-1626000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:1625800-1626000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
39	chr6:1625800-1626000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:1625800-1626000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
41	chr6:1625800-1626000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
42	chr6:1625800-1626000	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
43	chr6:1625800-1626000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:1625800-1626000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
45	chr6:1625800-1626000	Bivalent Enhancer	Colon Smooth Muscle	Colon
46	chr6:1625800-1626000	Bivalent Enhancer	Fetal Intestine Large	intestine
47	chr6:1625800-1626000	Bivalent/Poised TSS	Fetal Kidney	kidney
48	chr6:1625800-1626000	Bivalent/Poised TSS	Fetal Thymus	thymus
49	chr6:1625800-1626000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
50	chr6:1625800-1626000	Bivalent Enhancer	Stomach Mucosa	stomach

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