Variant report

Variant	rs561658785
Chromosome Location	chr7:26825462-26825463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv887855	chr7:26823963-26872652	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26806600-26829400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:26808000-26854800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:26810400-26829000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:26810600-26835200	Weak transcription	Spleen	Spleen
5	chr7:26812400-26849000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:26812800-26841600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:26813000-26834000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:26813000-26871200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:26816600-26834000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr7:26820800-26831000	Weak transcription	Aorta	Aorta
11	chr7:26821000-26843000	Weak transcription	Fetal Lung	lung
12	chr7:26822400-26834000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:26823000-26834600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:26823000-26846400	Weak transcription	Primary B cells from peripheral blood	blood
15	chr7:26823400-26833800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr7:26823400-26839600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:26824200-26832600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:26824600-26827200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:26824600-26832600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:26824800-26827200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:26824800-26827200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:26825400-26825600	Enhancers	Lung	lung
23	chr7:26825400-26827600	Strong transcription	Primary B cells from cord blood	blood
24	chr7:26825400-26872400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links