Variant report

Variant	rs561664005
Chromosome Location	chr10:49820231-49820232
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49812643..49815279-chr10:49817934..49821454,3	K562	blood:
2	chr10:49814485..49816162-chr10:49819695..49822517,2	MCF-7	breast:
3	chr10:49816362..49818003-chr10:49818843..49820950,2	K562	blood:

Variant related genes	Relation type
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv540624	chr10:49805087-49822634	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv15884	chr10:49819411-49820388	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49813400-49844200	Weak transcription	Pancreas	Pancrea
2	chr10:49814200-49823400	Enhancers	NHDF-Ad	bronchial
3	chr10:49815000-49823000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:49815800-49822200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:49816200-49820600	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:49816400-49820400	Weak transcription	Brain Anterior Caudate	brain
7	chr10:49816800-49820400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:49817400-49820600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:49818800-49821200	Enhancers	Brain Substantia Nigra	brain
10	chr10:49818800-49821600	Enhancers	HSMMtube	muscle
11	chr10:49819200-49820800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:49819200-49821000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:49819400-49820400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:49819400-49820400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:49819400-49821000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:49819400-49823200	Enhancers	HMEC	breast
17	chr10:49819600-49821600	Enhancers	GM12878-XiMat	blood
18	chr10:49819600-49822800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:49819600-49823200	Enhancers	HSMM	muscle
20	chr10:49820000-49820400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:49820000-49820600	Weak transcription	Aorta	Aorta
22	chr10:49820000-49823000	Enhancers	Osteobl	bone
23	chr10:49820200-49820400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:49820200-49820400	Enhancers	Brain Cingulate Gyrus	brain
25	chr10:49820200-49820800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:49820200-49821200	Enhancers	HUVEC	blood vessel
27	chr10:49820200-49821400	Enhancers	NH-A	brain
28	chr10:49820200-49823200	Enhancers	NHLF	lung

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