The 2.0 version of rSNPBase

Variant report

Variant rs56166669
Chromosome Location chr20:16317251-16317252
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16262600-16346200 Weak transcription Gastric stomach
2 chr20:16276400-16348200 Weak transcription Colon Smooth Muscle Colon
3 chr20:16285400-16330000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr20:16288000-16332400 Weak transcription Brain Cingulate Gyrus brain
5 chr20:16288400-16318200 Weak transcription Pancreas Pancrea
6 chr20:16288800-16318600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr20:16289400-16348000 Weak transcription Colonic Mucosa Colon
8 chr20:16289800-16323200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr20:16291200-16317800 Weak transcription Esophagus oesophagus
10 chr20:16291400-16331000 Weak transcription Brain Inferior Temporal Lobe brain
11 chr20:16294000-16318200 Weak transcription Fetal Stomach stomach
12 chr20:16295600-16318600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr20:16295600-16349000 Weak transcription HepG2 liver
14 chr20:16296600-16345200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr20:16296800-16318200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr20:16298800-16333400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr20:16301200-16317400 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr20:16302800-16330600 Weak transcription Brain Substantia Nigra brain
19 chr20:16306600-16328400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr20:16308400-16329400 Weak transcription Skeletal Muscle Male skeletal muscle
21 chr20:16309000-16319400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr20:16309800-16326600 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr20:16311800-16329000 Weak transcription Psoas Muscle Psoas
24 chr20:16312400-16331200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr20:16314000-16329600 Weak transcription Lung lung
26 chr20:16314400-16317600 Strong transcription Adipose Nuclei Adipose
27 chr20:16314600-16319400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr20:16314600-16328800 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr20:16315000-16322200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr20:16315200-16318400 Weak transcription NHEK skin
31 chr20:16315400-16317600 Weak transcription Stomach Smooth Muscle stomach
32 chr20:16315400-16326200 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr20:16315400-16330600 Weak transcription Brain Hippocampus Middle brain
34 chr20:16315400-16331000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr20:16315400-16345000 Weak transcription Duodenum Mucosa Duodenum
36 chr20:16315400-16346200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr20:16315400-16348000 Weak transcription Fetal Intestine Large intestine
38 chr20:16315400-16364400 Weak transcription Rectal Smooth Muscle rectum
39 chr20:16315600-16317400 Weak transcription Primary T cells from cord blood blood
40 chr20:16315600-16319400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr20:16315600-16321600 Weak transcription Ovary ovary
42 chr20:16315600-16329600 Weak transcription Fetal Muscle Trunk muscle
43 chr20:16315600-16329800 Weak transcription Fetal Muscle Leg muscle
44 chr20:16315600-16331000 Weak transcription Aorta Aorta
45 chr20:16315600-16346200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr20:16315600-16348000 Weak transcription Primary B cells from peripheral blood blood
47 chr20:16315600-16348400 Weak transcription Spleen Spleen
48 chr20:16315800-16318200 Weak transcription Fetal Intestine Small intestine
49 chr20:16315800-16357600 Weak transcription Right Ventricle heart
50 chr20:16316000-16321400 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015