Variant report

Variant	rs56168737
Chromosome Location	chr1:224660441-224660442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10799573	0.85[ASN][1000 genomes]
rs10799574	0.85[ASN][1000 genomes]
rs10916625	0.81[AFR][1000 genomes]
rs1112556	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121977	0.83[ASN][1000 genomes]
rs12124686	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1361618	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1572992	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2405023	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405028	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3958434	0.99[EUR][1000 genomes]
rs4517322	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4653588	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4654045	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6426129	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6673865	0.85[ASN][1000 genomes]
rs6683524	0.90[ASN][1000 genomes]
rs6688125	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7531794	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7536124	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536574	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7542507	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224660400-224660800	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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