Variant report

Variant	rs561689396
Chromosome Location	chr11:85885624-85885625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85848367..85849977-chr11:85884003..85885700,2	K562	blood:
2	chr11:85778265..85780828-chr11:85883651..85886278,2	K562	blood:
3	chr11:85779660..85782630-chr11:85885174..85887407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1040400	chr11:85883303-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1043422	chr11:85883840-85898809	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1049658	chr11:85885461-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85882600-85887000	Enhancers	Fetal Muscle Leg	muscle
2	chr11:85882600-85887800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:85882600-85890800	Enhancers	Placenta	Placenta
4	chr11:85882600-85891600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:85882800-85886400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:85883200-85885800	Enhancers	Brain Hippocampus Middle	brain
7	chr11:85883200-85888000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:85883200-85891400	Weak transcription	Thymus	Thymus
9	chr11:85883400-85887200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:85883400-85888200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:85883400-85888800	Enhancers	HMEC	breast
12	chr11:85883600-85885800	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:85883600-85888000	Enhancers	HUVEC	blood vessel
14	chr11:85883600-85888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr11:85883600-85889000	Enhancers	Osteobl	bone
16	chr11:85883800-85885800	Enhancers	Brain Angular Gyrus	brain
17	chr11:85883800-85886000	Enhancers	Brain Cingulate Gyrus	brain
18	chr11:85883800-85886000	Enhancers	Brain Substantia Nigra	brain
19	chr11:85883800-85886000	Enhancers	Fetal Thymus	thymus
20	chr11:85883800-85886200	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:85883800-85886400	Enhancers	Fetal Intestine Small	intestine
22	chr11:85883800-85886600	Enhancers	Fetal Intestine Large	intestine
23	chr11:85883800-85886800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:85883800-85887000	Enhancers	NHDF-Ad	bronchial
25	chr11:85883800-85887000	Enhancers	NHLF	lung
26	chr11:85883800-85887800	Enhancers	HSMMtube	muscle
27	chr11:85883800-85890400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr11:85883800-85890800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:85884000-85885800	Enhancers	A549	lung
30	chr11:85884000-85886000	Enhancers	Fetal Lung	lung
31	chr11:85884000-85886200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:85884000-85886200	Enhancers	Brain Anterior Caudate	brain
33	chr11:85884000-85886200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:85884000-85887000	Enhancers	Right Atrium	heart
35	chr11:85884200-85886000	Enhancers	Fetal Stomach	stomach
36	chr11:85884200-85886200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:85884400-85887400	Weak transcription	GM12878-XiMat	blood
38	chr11:85884600-85886000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:85884600-85887000	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr11:85884600-85888200	Enhancers	Liver	Liver
41	chr11:85884800-85886000	Enhancers	Colon Smooth Muscle	Colon
42	chr11:85884800-85886200	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr11:85884800-85887000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr11:85884800-85887000	Enhancers	Fetal Heart	heart
45	chr11:85884800-85888800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:85885000-85885800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:85885000-85886000	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr11:85885000-85886200	Enhancers	Stomach Mucosa	stomach
49	chr11:85885000-85886400	Enhancers	Rectal Smooth Muscle	rectum
50	chr11:85885200-85885800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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