Variant report

Variant	rs56169032
Chromosome Location	chr4:152914420-152914421
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57825313	1.00[EUR][1000 genomes]
rs60722156	1.00[EUR][1000 genomes]
rs73862271	1.00[EUR][1000 genomes]
rs73862585	1.00[EUR][1000 genomes]
rs73865529	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152910000-152915200	Enhancers	Fetal Brain Male	brain
2	chr4:152910000-152915800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:152910200-152915200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:152910400-152915600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr4:152910400-152915800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:152910400-152915800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr4:152910600-152915600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:152910600-152916000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr4:152910800-152914800	Weak transcription	Spleen	Spleen
10	chr4:152911000-152915600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr4:152911200-152914600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr4:152911400-152915800	Enhancers	Dnd41	blood
13	chr4:152911600-152915400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:152912000-152914600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:152912200-152914600	Enhancers	Fetal Brain Female	brain
16	chr4:152912400-152914800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:152912600-152914800	Enhancers	Brain Germinal Matrix	brain
18	chr4:152912600-152915600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr4:152912800-152914600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr4:152912800-152914600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:152912800-152914800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr4:152912800-152914800	Weak transcription	Thymus	Thymus
23	chr4:152912800-152915400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:152912800-152915600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:152913000-152914600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:152913000-152915000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr4:152913200-152914600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr4:152913400-152914800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:152913400-152915600	Enhancers	Primary T cells from cord blood	blood
30	chr4:152913600-152914600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr4:152913600-152914600	Enhancers	Aorta	Aorta
32	chr4:152913600-152914600	Weak transcription	Fetal Thymus	thymus
33	chr4:152913600-152914800	Enhancers	H9 Cell Line	embryonic stem cell
34	chr4:152913600-152915000	Enhancers	Fetal Muscle Leg	muscle
35	chr4:152913800-152914600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr4:152913800-152914800	Weak transcription	Right Atrium	heart
37	chr4:152913800-152919400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:152914000-152915600	Weak transcription	NHEK	skin
39	chr4:152914200-152914800	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr4:152914200-152915000	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr4:152914200-152915200	Enhancers	Duodenum Mucosa	Duodenum
42	chr4:152914200-152919400	Weak transcription	Fetal Heart	heart
43	chr4:152914400-152914600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr4:152914400-152914800	Enhancers	Stomach Mucosa	stomach
45	chr4:152914400-152919600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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