Variant report

Variant	rs561699538
Chromosome Location	chr5:74405072-74405073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74404200-74405600	Enhancers	NHEK	skin
2	chr5:74404200-74405800	Enhancers	Hela-S3	cervix
3	chr5:74404200-74406200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:74404400-74405400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:74404400-74405600	Enhancers	HMEC	breast
6	chr5:74404400-74405800	Enhancers	Primary T cells from cord blood	blood
7	chr5:74404400-74405800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:74405000-74405400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:74405000-74405600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr5:74405000-74405800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:74405000-74405800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr5:74405000-74405800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr5:74405000-74405800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:74405000-74405800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr5:74405000-74405800	Enhancers	Fetal Thymus	thymus
16	chr5:74405000-74406200	Enhancers	Primary T helper cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links