Variant report

Variant	rs561709082
Chromosome Location	chr10:89680401-89680402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:89680189-89680592	GM12892	blood:	n/a	n/a
2	POLR2A	chr10:89680304-89680855	GM12878	blood:	n/a	n/a
3	POLR2A	chr10:89680147-89680808	GM12892	blood:	n/a	n/a
4	POLR2A	chr10:89680241-89680942	GM12891	blood:	n/a	n/a
5	POLR2A	chr10:89680182-89681026	GM12892	blood:	n/a	n/a
6	POLR2A	chr10:89680386-89680554	GM12878	blood:	n/a	n/a
7	POLR2A	chr10:89680384-89680573	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr10:89680215-89680707	GM12891	blood:	n/a	n/a
9	POLR2A	chr10:89680163-89680891	GM12891	blood:	n/a	n/a
10	POLR2A	chr10:89680220-89680728	GM12878	blood:	n/a	n/a
11	POLR2A	chr10:89680386-89680565	GM12878	blood:	n/a	n/a
12	POLR2A	chr10:89680154-89680861	GM12892	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89679106..89681199-chr10:89681260..89684202,3	K562	blood:
2	chr10:89673644..89678140-chr10:89679296..89683460,5	K562	blood:
3	chr10:89621607..89624056-chr10:89678567..89681006,2	MCF-7	breast:
4	chr10:89671146..89673722-chr10:89679466..89681540,2	MCF-7	breast:

No data

Variant related genes	Relation type
PTEN	TF binding region
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1044043	chr10:89678935-89701069	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr10:89663600-89686400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:89663600-89687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
6	chr10:89664000-89681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:89666000-89712400	Weak transcription	Fetal Brain Male	brain
8	chr10:89666600-89682800	Weak transcription	Placenta	Placenta
9	chr10:89671600-89682800	Weak transcription	Spleen	Spleen
10	chr10:89672000-89681600	Weak transcription	Aorta	Aorta
11	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
12	chr10:89674000-89685600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:89674200-89695200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:89674200-89711000	Weak transcription	HepG2	liver
15	chr10:89674600-89682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:89674600-89684400	Weak transcription	Fetal Kidney	kidney
17	chr10:89674600-89686400	Weak transcription	HSMMtube	muscle
18	chr10:89674600-89687000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:89674600-89689800	Weak transcription	Fetal Lung	lung
20	chr10:89674600-89695600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:89674800-89682200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
23	chr10:89675400-89681200	Weak transcription	Lung	lung
24	chr10:89675400-89681600	Weak transcription	Ovary	ovary
25	chr10:89675400-89686400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:89675600-89681600	Weak transcription	Right Ventricle	heart
28	chr10:89675600-89681600	Weak transcription	HSMM	muscle
29	chr10:89675600-89681800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:89675600-89682800	Weak transcription	Pancreas	Pancrea
31	chr10:89675600-89682800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:89675600-89683800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:89675600-89685400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:89675600-89686200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:89675600-89687200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:89675600-89705000	Weak transcription	Fetal Stomach	stomach
37	chr10:89675600-89705200	Weak transcription	Esophagus	oesophagus
38	chr10:89675800-89682000	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:89676000-89681400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:89676000-89681600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:89676000-89681800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:89676000-89682400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:89676200-89681800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:89676200-89683000	Weak transcription	Fetal Intestine Large	intestine
45	chr10:89676200-89686400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:89676400-89681200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:89676400-89681400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:89676400-89682400	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:89676600-89681400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr10:89676600-89681400	Weak transcription	Fetal Heart	heart

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