Variant report

Variant	rs561732508
Chromosome Location	chr5:177317885-177317886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1033211	chr5:177133646-177383386	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1030383	chr5:177310325-177571254	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	nsv883184	chr5:177311043-177488281	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv968281	chr5:177317594-177358347	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177303200-177318600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr5:177303400-177318400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:177303400-177318600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:177303400-177318600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:177303400-177318600	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:177303400-177320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:177303400-177320400	Weak transcription	Esophagus	oesophagus
8	chr5:177303400-177322000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:177303400-177328600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:177310600-177328800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:177311000-177318600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:177311000-177321400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:177311200-177318200	Weak transcription	Liver	Liver
14	chr5:177311200-177318600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr5:177311200-177318600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:177311800-177318200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:177311800-177318800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:177317600-177318600	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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