Variant report

Variant	rs56173641
Chromosome Location	chr8:10807320-10807321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11779116	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4413733	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4623373	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4840526	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4841463	0.92[EUR][1000 genomes]
rs4841464	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55905112	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55968942	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56084964	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56112432	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56166963	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56407290	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59109872	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73196845	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73196859	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73196861	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv522127	chr8:10797831-10815515	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv519822	chr8:10803617-10815515	Weak transcription Enhancers Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv518360	chr8:10805015-10816873	Enhancers Bivalent Enhancer Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10805200-10807600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:10805800-10808000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:10807000-10807400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:10807000-10807800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:10807200-10808000	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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