Variant report

Variant	rs56174390
Chromosome Location	chr16:46397632-46397633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351345	chr16:46385802-46460549	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	esv3415772	chr16:46385802-46461249	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv3348821	chr16:46385802-46461449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	esv3362417	chr16:46385802-46461449	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3418529	chr16:46385802-46461449	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	esv3433355	chr16:46385802-46461449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv482466	chr16:46385802-46508907	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv572449	chr16:46385922-46443964	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv572450	chr16:46385922-46450037	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
10	nsv572451	chr16:46385922-46452565	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
11	nsv572452	chr16:46385922-46498901	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
12	nsv572453	chr16:46385922-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
13	nsv572454	chr16:46385922-46499821	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
14	nsv572455	chr16:46385922-46500009	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
15	nsv572456	chr16:46385922-46500195	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
16	nsv572457	chr16:46385922-46500302	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
17	nsv572458	chr16:46385922-46500451	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
18	esv3327059	chr16:46386277-46400095	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv433447	chr16:46386457-46479625	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
20	nsv572459	chr16:46386457-46539392	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
21	esv1799780	chr16:46386457-46875496	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv8334	chr16:46388327-46406293	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
23	esv8084	chr16:46388431-46400298	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	n/a
24	esv3364135	chr16:46391025-46403755	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	n/a
25	esv9457	chr16:46391299-46404616	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
26	esv3446531	chr16:46392435-46398262	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
27	esv3378346	chr16:46392546-46398322	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
28	esv8333	chr16:46393063-46405316	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
29	esv3379793	chr16:46393636-46413404	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
30	esv7354	chr16:46394127-46400140	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
31	esv9588	chr16:46394166-46406630	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a
32	esv3349527	chr16:46394481-46398248	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
33	esv3496286	chr16:46394540-46403270	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
34	esv3496287	chr16:46394540-46403270	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
35	esv3388320	chr16:46395365-46408706	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
36	esv6410	chr16:46395371-46407455	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
37	esv8384	chr16:46395386-46401430	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
38	esv3371195	chr16:46395533-46401360	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
39	nsv103863	chr16:46397034-46397883	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
40	nsv103586	chr16:46397034-46402841	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
41	esv4026	chr16:46397519-46430215	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46385800-46404000	ZNF genes & repeats	Primary B cells from cord blood	blood
2	chr16:46389200-46404000	ZNF genes & repeats	Primary T cells from cord blood	blood
3	chr16:46389200-46404000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr16:46397000-46398000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr16:46397000-46398200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr16:46397000-46398200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:46397000-46398200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr16:46397000-46398200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:46397000-46398200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:46397000-46398200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr16:46397000-46398200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr16:46397000-46398200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr16:46397000-46398200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr16:46397000-46398200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr16:46397000-46398200	Weak transcription	Adipose Nuclei	Adipose
16	chr16:46397000-46398200	Weak transcription	Liver	Liver
17	chr16:46397000-46398200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr16:46397000-46398200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr16:46397000-46398200	Weak transcription	Fetal Brain Male	brain
20	chr16:46397000-46398200	Weak transcription	Fetal Heart	heart
21	chr16:46397000-46398200	Weak transcription	Fetal Intestine Large	intestine
22	chr16:46397000-46398200	Weak transcription	Fetal Stomach	stomach
23	chr16:46397000-46398200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr16:46397000-46398200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr16:46397000-46398200	Weak transcription	Dnd41	blood
26	chr16:46397000-46398200	Weak transcription	K562	blood
27	chr16:46397000-46398200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr16:46397000-46398400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr16:46397000-46398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr16:46397000-46398400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr16:46397000-46398400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr16:46397000-46398400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr16:46397000-46398400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr16:46397000-46398400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr16:46397000-46398400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr16:46397000-46398400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr16:46397000-46398400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr16:46397000-46398400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr16:46397000-46398400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr16:46397000-46398400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr16:46397000-46398400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr16:46397000-46398400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr16:46397000-46398400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr16:46397000-46398400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr16:46397000-46398400	Weak transcription	Brain Anterior Caudate	brain
46	chr16:46397000-46398400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr16:46397000-46398400	Weak transcription	Colon Smooth Muscle	Colon
48	chr16:46397000-46398400	Weak transcription	Fetal Kidney	kidney
49	chr16:46397000-46398400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr16:46397000-46398400	Weak transcription	Fetal Lung	lung

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