Variant report

Variant	rs561748169
Chromosome Location	chr6:144327998-144327999
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:144274204..144276778-chr6:144326473..144328934,2	K562	blood:
2	chr6:143830342..143833743-chr6:144326901..144329456,3	K562	blood:
3	chr6:144284653..144286601-chr6:144327499..144329714,2	K562	blood:
4	chr6:144318653..144320908-chr6:144327115..144329301,2	MCF-7	breast:
5	chr6:143769099..143771662-chr6:144327770..144329794,2	K562	blood:
6	chr6:143824207..143826466-chr6:144327937..144329566,2	K562	blood:
7	chr6:144162948..144166199-chr6:144325900..144330312,6	K562	blood:
8	chr6:144162988..144165888-chr6:144327569..144329475,4	K562	blood:
9	chr6:144284921..144286601-chr6:144327267..144329714,2	K562	blood:
10	chr6:144321371..144324041-chr6:144325680..144328312,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SF3B5-2	chr6:144325474-144329867	NONHSAT115373

No data

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction
ENSG00000223203	Chromatin interaction
ENSG00000229036	Chromatin interaction
ENSG00000001036	Chromatin interaction
ENSG00000135521	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv5516	chr6:144300321-144345812	Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv3339290	chr6:144327784-144330832	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144325200-144330000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:144326000-144330000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:144326200-144329600	Active TSS	Fetal Muscle Leg	muscle
4	chr6:144326200-144330000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:144326600-144330200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:144327200-144328000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:144327200-144329800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:144327200-144329800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr6:144327200-144329800	Active TSS	Fetal Intestine Large	intestine
10	chr6:144327200-144329800	Active TSS	Fetal Muscle Trunk	muscle
11	chr6:144327200-144329800	Active TSS	Fetal Stomach	stomach
12	chr6:144327200-144329800	Active TSS	K562	blood
13	chr6:144327200-144329800	Active TSS	NHLF	lung
14	chr6:144327200-144330000	Active TSS	Stomach Smooth Muscle	stomach
15	chr6:144327200-144330000	Active TSS	NHDF-Ad	bronchial
16	chr6:144327400-144328000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:144327400-144328000	Enhancers	Fetal Heart	heart
18	chr6:144327400-144328200	Enhancers	Fetal Thymus	thymus
19	chr6:144327400-144329000	Active TSS	Placenta	Placenta
20	chr6:144327400-144329400	Active TSS	Colon Smooth Muscle	Colon
21	chr6:144327400-144329600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:144327400-144329600	Active TSS	Colonic Mucosa	Colon
23	chr6:144327400-144329800	Active TSS	Left Ventricle	heart
24	chr6:144327400-144329800	Active TSS	HSMMtube	muscle
25	chr6:144327400-144330000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr6:144327400-144330000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:144327400-144330000	Active TSS	Aorta	Aorta
28	chr6:144327400-144330000	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:144327400-144330000	Active TSS	Fetal Brain Female	brain
30	chr6:144327400-144330000	Active TSS	Fetal Lung	lung
31	chr6:144327400-144330000	Active TSS	Ovary	ovary
32	chr6:144327400-144330000	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr6:144327400-144330000	Active TSS	Right Atrium	heart
34	chr6:144327400-144330000	Active TSS	A549	lung
35	chr6:144327400-144330000	Active TSS	HSMM	muscle
36	chr6:144327400-144330000	Active TSS	NHEK	skin
37	chr6:144327400-144330200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
38	chr6:144327400-144330200	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr6:144327400-144330200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:144327400-144330200	Active TSS	Fetal Kidney	kidney
41	chr6:144327600-144328000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:144327600-144328000	Enhancers	Primary hematopoietic stem cells	blood
43	chr6:144327600-144328000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:144327600-144328200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr6:144327600-144329000	Active TSS	Fetal Brain Male	brain
46	chr6:144327600-144329600	Active TSS	Adipose Nuclei	Adipose
47	chr6:144327600-144329800	Active TSS	Pancreas	Pancrea
48	chr6:144327600-144330000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:144327600-144330000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:144327600-144330000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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