Variant report

Variant	rs56176025
Chromosome Location	chr14:42341935-42341936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11539099	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55993114	1.00[AMR][1000 genomes]
rs57469155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59280798	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61191609	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61438069	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74045462	1.00[AMR][1000 genomes]
rs74045713	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42338200-42342200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:42341400-42343600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:42341600-42342200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:42341600-42342200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:42341600-42343000	Enhancers	Fetal Brain Female	brain
6	chr14:42341600-42343600	Enhancers	Fetal Brain Male	brain
7	chr14:42341600-42343800	Enhancers	Brain Germinal Matrix	brain
8	chr14:42341800-42342600	Enhancers	Fetal Lung	lung
9	chr14:42341800-42343600	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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