Variant report

Variant	rs56176906
Chromosome Location	chr15:52485066-52485067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52472583..52475505-chr15:52484496..52486835,2	MCF-7	breast:
2	chr15:52480643..52483811-chr15:52484506..52486850,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069966	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471244	chr15:52305463-52511465	Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1054372	chr15:52369078-52579464	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv542387	chr15:52369078-52579464	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv833005	chr15:52389869-52541330	Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv904220	chr15:52485024-52526507	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	esv2486190	chr15:52485062-52485066	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1997914	chr15:52485062-52485067	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52473000-52489000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:52473200-52513600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:52473400-52485600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:52473400-52496400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:52473400-52496400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:52473400-52496600	Weak transcription	Spleen	Spleen
7	chr15:52473600-52512400	Weak transcription	Primary B cells from cord blood	blood
8	chr15:52474600-52488400	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:52475800-52505600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:52477600-52497000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr15:52477600-52497200	Weak transcription	Stomach Mucosa	stomach
12	chr15:52477800-52488000	Weak transcription	Gastric	stomach
13	chr15:52477800-52494800	Weak transcription	Fetal Intestine Large	intestine
14	chr15:52478000-52496200	Weak transcription	Liver	Liver
15	chr15:52478600-52488400	Weak transcription	Aorta	Aorta
16	chr15:52479600-52487400	Weak transcription	HepG2	liver
17	chr15:52479600-52495400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:52479600-52496400	Weak transcription	Esophagus	oesophagus
19	chr15:52479800-52485600	Weak transcription	Ovary	ovary
20	chr15:52479800-52532800	Weak transcription	Brain Angular Gyrus	brain
21	chr15:52481400-52485600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:52481600-52496600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:52482000-52485600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:52482600-52496200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:52483400-52492400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr15:52483600-52485600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:52483600-52485800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:52483600-52485800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:52483600-52488400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:52483600-52489200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr15:52483600-52496400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:52483800-52485600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:52483800-52487200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:52483800-52487200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:52483800-52487400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr15:52483800-52487800	Weak transcription	Colonic Mucosa	Colon
37	chr15:52483800-52488400	Weak transcription	Fetal Stomach	stomach
38	chr15:52483800-52497000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr15:52484000-52485800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr15:52484000-52492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:52484200-52488200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:52484200-52488200	Weak transcription	Fetal Intestine Small	intestine
43	chr15:52484200-52488400	Weak transcription	Pancreas	Pancrea
44	chr15:52484200-52490600	Weak transcription	A549	lung
45	chr15:52484200-52496400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr15:52484200-52497000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:52484200-52498600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:52484200-52503200	Weak transcription	Lung	lung
49	chr15:52484400-52487200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:52484400-52503800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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