The 2.0 version of rSNPBase

Variant report

Variant rs561769957
Chromosome Location chr1:168436733-168436734
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:168433800-168443400 Weak transcription Liver Liver
2 chr1:168434000-168437000 Enhancers Primary hematopoietic stem cells short term culture blood
3 chr1:168434400-168443600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr1:168434800-168439200 Enhancers Dnd41 blood
5 chr1:168434800-168440800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr1:168435000-168436800 Enhancers Primary T helper 17 cells PMA-I stimulated --
7 chr1:168435000-168436800 Enhancers Primary T killer memory cells from peripheral blood blood
8 chr1:168435000-168436800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:168435000-168437000 Enhancers Primary T killer naive cells fromperipheralblood blood
10 chr1:168435000-168437600 Enhancers Fetal Intestine Small intestine
11 chr1:168435000-168437800 Enhancers Fetal Kidney kidney
12 chr1:168435000-168438400 Enhancers Primary hematopoietic stem cells blood
13 chr1:168435000-168438400 Enhancers Placenta Amnion Placenta Amnion
14 chr1:168435000-168439600 Enhancers HSMMtube muscle
15 chr1:168435000-168440400 Enhancers Primary T helper cells fromperipheralblood blood
16 chr1:168435000-168440600 Enhancers Primary T helper naive cells from peripheral blood blood
17 chr1:168435000-168440600 Enhancers Rectal Smooth Muscle rectum
18 chr1:168435200-168437000 Enhancers Primary T helper naive cells fromperipheralblood blood
19 chr1:168435200-168437400 Enhancers Fetal Intestine Large intestine
20 chr1:168435200-168437800 Enhancers Primary monocytes fromperipheralblood blood
21 chr1:168435200-168437800 Enhancers Colonic Mucosa Colon
22 chr1:168435200-168437800 Enhancers Rectal Mucosa Donor 29 rectum
23 chr1:168435200-168438200 Flanking Active TSS GM12878-XiMat blood
24 chr1:168435200-168439400 Enhancers Primary T cells fromperipheralblood blood
25 chr1:168435200-168439800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:168435200-168439800 Enhancers NHDF-Ad bronchial
27 chr1:168435200-168440000 Enhancers Primary T cells from cord blood blood
28 chr1:168435200-168440200 Enhancers Muscle Satellite Cultured Cells --
29 chr1:168435200-168440400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:168435200-168440400 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr1:168435200-168440400 Enhancers HSMM muscle
32 chr1:168435200-168440600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:168435200-168440600 Enhancers Colon Smooth Muscle Colon
34 chr1:168435200-168440600 Enhancers Skeletal Muscle Female skeletal muscle
35 chr1:168435200-168440600 Enhancers HMEC breast
36 chr1:168435200-168440600 Enhancers NHEK skin
37 chr1:168435200-168440800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:168435400-168437400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
39 chr1:168435400-168437600 Enhancers Monocytes-CD14+_RO01746 blood
40 chr1:168435400-168439200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:168435400-168439800 Enhancers Adipose Nuclei Adipose
42 chr1:168435400-168439800 Weak transcription Pancreatic Islets Pancreatic Islet
43 chr1:168435400-168440600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:168435600-168437000 Weak transcription H9 Cell Line embryonic stem cell
45 chr1:168435600-168437200 Enhancers Stomach Mucosa stomach
46 chr1:168435600-168437400 Enhancers Primary B cells from peripheral blood blood
47 chr1:168435600-168437600 Enhancers Primary B cells from cord blood blood
48 chr1:168435600-168437800 Enhancers Duodenum Smooth Muscle Duodenum
49 chr1:168435600-168439000 Weak transcription Ovary ovary
50 chr1:168435800-168436800 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015