Variant report

Variant	rs56177223
Chromosome Location	chr14:24888535-24888536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24888463..24890118-chr14:24909911..24911768,2	K562	blood:
2	chr14:24888463..24890128-chr14:24910268..24912062,2	K562	blood:
3	chr14:24885943..24890700-chr14:24894774..24898947,5	K562	blood:
4	chr14:24883205..24885781-chr14:24888208..24890175,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139899	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000100445	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74036634	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24870800-24890600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:24871800-24891600	Weak transcription	Fetal Thymus	thymus
3	chr14:24884200-24894200	Weak transcription	Left Ventricle	heart
4	chr14:24884600-24889400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:24884600-24891800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr14:24885200-24897400	Weak transcription	Lung	lung
7	chr14:24885800-24891200	Weak transcription	K562	blood
8	chr14:24886200-24889000	Enhancers	Pancreas	Pancrea
9	chr14:24886200-24889400	Weak transcription	Brain Germinal Matrix	brain
10	chr14:24886400-24888800	Enhancers	Stomach Mucosa	stomach
11	chr14:24886600-24889800	Weak transcription	Fetal Intestine Small	intestine
12	chr14:24886600-24894400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:24887000-24888800	Enhancers	Ovary	ovary
14	chr14:24887000-24888800	Enhancers	HUVEC	blood vessel
15	chr14:24887200-24888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr14:24887200-24888800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:24887200-24888800	Enhancers	HMEC	breast
18	chr14:24887400-24888600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:24887400-24888800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:24887600-24888600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:24887600-24888600	Enhancers	Adipose Nuclei	Adipose
22	chr14:24887600-24888600	Enhancers	Duodenum Mucosa	Duodenum
23	chr14:24887600-24888800	Enhancers	Placenta	Placenta
24	chr14:24887600-24888800	Enhancers	Gastric	stomach
25	chr14:24887800-24888600	Enhancers	Colon Smooth Muscle	Colon
26	chr14:24887800-24888800	Enhancers	Colonic Mucosa	Colon
27	chr14:24888000-24888800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:24888200-24888600	Enhancers	Small Intestine	intestine
29	chr14:24888200-24889600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr14:24888200-24896000	Weak transcription	Right Atrium	heart
31	chr14:24888400-24888600	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr14:24888400-24888800	Enhancers	NHEK	skin
33	chr14:24888400-24891400	Weak transcription	Fetal Intestine Large	intestine
34	chr14:24888400-24891800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:24888400-24892000	Weak transcription	Liver	Liver
36	chr14:24888400-24896000	Weak transcription	Esophagus	oesophagus
37	chr14:24888400-24897000	Weak transcription	Spleen	Spleen

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