Variant report

Variant	rs561780805
Chromosome Location	chr9:98799209-98799210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3382610	chr9:98798281-98800379	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98790800-98810800	Weak transcription	Brain Angular Gyrus	brain
2	chr9:98793600-98800800	Weak transcription	Brain Substantia Nigra	brain
3	chr9:98793600-98804600	Weak transcription	Fetal Heart	heart
4	chr9:98794400-98801000	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:98794600-98799400	Weak transcription	Pancreas	Pancrea
6	chr9:98796800-98802000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:98798000-98800600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:98798200-98799400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:98798200-98801000	Weak transcription	Fetal Lung	lung
10	chr9:98798800-98802400	Weak transcription	Fetal Brain Male	brain
11	chr9:98799200-98804600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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