Variant report

Variant	rs561787833
Chromosome Location	chr11:93578317-93578318
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93578025..93580414-chr11:93582241..93584274,2	MCF-7	breast:
2	chr11:93573034..93574982-chr11:93577351..93579651,2	K562	blood:

Variant related genes	Relation type
ENSG00000214376	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv826039	chr11:93577753-93578507	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1952279	chr11:93577818-93578408	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3522964	chr11:93577898-93578321	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3250	chr11:93577971-93578331	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93570400-93579200	Enhancers	Stomach Mucosa	stomach
2	chr11:93572600-93582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:93574400-93582800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:93574800-93579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:93575800-93578400	Weak transcription	Osteobl	bone
6	chr11:93575800-93582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:93575800-93582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:93576600-93581800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:93576600-93583000	Weak transcription	Esophagus	oesophagus
10	chr11:93577400-93578800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:93577400-93579600	Enhancers	NHEK	skin
12	chr11:93577600-93579000	Enhancers	Placenta	Placenta
13	chr11:93577800-93579000	Enhancers	HMEC	breast
14	chr11:93577800-93579200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:93577800-93580000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:93578000-93578400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr11:93578000-93580000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:93578200-93579000	Enhancers	NHDF-Ad	bronchial
19	chr11:93578200-93579200	Enhancers	HSMMtube	muscle
20	chr11:93578200-93579600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:93578200-93579800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:93578200-93579800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:93578200-93579800	Enhancers	HSMM	muscle
24	chr11:93578200-93580000	Enhancers	Muscle Satellite Cultured Cells	--

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