Variant report

Variant	rs561802623
Chromosome Location	chr13:54750691-54750692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3335513	chr13:54749251-54752499	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54747600-54751800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:54748800-54751000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:54749800-54752200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:54749800-54752400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:54750000-54753200	Weak transcription	Fetal Heart	heart
6	chr13:54750000-54754000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:54750000-54757200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:54750400-54754200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:54750400-54758000	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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