Variant report

Variant	rs561817862
Chromosome Location	chr11:45993524-45993525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr11:45993345-45993536	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
PHF21A	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv38731	chr11:45993457-45998686	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45952400-45996200	Weak transcription	Stomach Mucosa	stomach
2	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:45975200-45999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:45980200-45995600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:45981400-45995000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:45982200-46002200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:45983000-45994000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:45983000-46002200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:45983200-45993600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:45983200-45993600	Strong transcription	Thymus	Thymus
13	chr11:45984000-45995000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:45985000-46002200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr11:45985200-45993800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr11:45985200-45994000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:45985400-46002600	Strong transcription	Primary B cells from cord blood	blood
18	chr11:45985600-45993800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:45985800-45997800	Strong transcription	Primary T cells from cord blood	blood
20	chr11:45985800-46003800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:45987000-45993800	Strong transcription	Liver	Liver
22	chr11:45987000-46004000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:45987200-46000800	Weak transcription	NHEK	skin
24	chr11:45987600-46004600	Weak transcription	Gastric	stomach
25	chr11:45988400-46004400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:45989400-45994800	Weak transcription	Fetal Heart	heart
27	chr11:45989400-46000000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:45989800-46000000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:45990000-46000000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:45990200-45995800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:45990400-46000600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:45990400-46001600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:45990800-46000000	Weak transcription	NH-A	brain
34	chr11:45991000-46004400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:45991000-46004400	Weak transcription	A549	lung
36	chr11:45991200-45995400	Strong transcription	K562	blood
37	chr11:45991400-45995600	Weak transcription	Colonic Mucosa	Colon
38	chr11:45991400-45997600	Weak transcription	Fetal Intestine Small	intestine
39	chr11:45991800-46003600	Weak transcription	Brain Germinal Matrix	brain
40	chr11:45992200-46004400	Weak transcription	HMEC	breast
41	chr11:45992400-45993600	Strong transcription	Small Intestine	intestine
42	chr11:45992400-45994200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:45992400-45996200	Weak transcription	NHDF-Ad	bronchial
44	chr11:45992600-46000000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr11:45992600-46003600	Weak transcription	Fetal Brain Male	brain
46	chr11:45992800-45994800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:45992800-45996400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr11:45992800-45997200	Weak transcription	HSMMtube	muscle
49	chr11:45992800-45997400	Weak transcription	Hela-S3	cervix
50	chr11:45992800-45998400	Weak transcription	GM12878-XiMat	blood

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