Variant report

Variant	rs56181968
Chromosome Location	chr6:139926170-139926171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59386518	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61155453	0.81[AFR][1000 genomes]
rs6906198	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139913000-139928600	Weak transcription	Ovary	ovary
2	chr6:139919800-139927600	Weak transcription	Fetal Kidney	kidney
3	chr6:139919800-139928200	Weak transcription	Fetal Lung	lung
4	chr6:139920800-139928600	Weak transcription	Osteobl	bone
5	chr6:139924400-139926600	Weak transcription	Placenta	Placenta
6	chr6:139924400-139928400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:139924600-139928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:139925000-139928600	Weak transcription	K562	blood
9	chr6:139925200-139928000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:139925400-139928000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:139925400-139928400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:139925400-139928400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:139925400-139928400	Weak transcription	Fetal Stomach	stomach
14	chr6:139925400-139928600	Weak transcription	Fetal Brain Male	brain
15	chr6:139925400-139928800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:139925400-139928800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:139925400-139928800	Weak transcription	Aorta	Aorta
18	chr6:139926000-139926600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:139926000-139927400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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